Bird evolution
Encyclopedia
The evolution of birds is thought to have begun in the Jurassic
Jurassic
The Jurassic is a geologic period and system that extends from about Mya to  Mya, that is, from the end of the Triassic to the beginning of the Cretaceous. The Jurassic constitutes the middle period of the Mesozoic era, also known as the age of reptiles. The start of the period is marked by...

 Period, with the earliest bird
Bird
Birds are feathered, winged, bipedal, endothermic , egg-laying, vertebrate animals. Around 10,000 living species and 188 families makes them the most speciose class of tetrapod vertebrates. They inhabit ecosystems across the globe, from the Arctic to the Antarctic. Extant birds range in size from...

s derived from theropod
Theropoda
Theropoda is both a suborder of bipedal saurischian dinosaurs, and a clade consisting of that suborder and its descendants . Dinosaurs belonging to the suborder theropoda were primarily carnivorous, although a number of theropod groups evolved herbivory, omnivory, and insectivory...

 dinosaur
Dinosaur
Dinosaurs are a diverse group of animals of the clade and superorder Dinosauria. They were the dominant terrestrial vertebrates for over 160 million years, from the late Triassic period until the end of the Cretaceous , when the Cretaceous–Paleogene extinction event led to the extinction of...

s. Birds are categorized as a biological class
Class (biology)
In biological classification, class is* a taxonomic rank. Other well-known ranks are life, domain, kingdom, phylum, order, family, genus, and species, with class fitting between phylum and order...

, Aves. The earliest known species of class Aves is Archaeopteryx lithographica
Archaeopteryx
Archaeopteryx , sometimes referred to by its German name Urvogel , is a genus of theropod dinosaur that is closely related to birds. The name derives from the Ancient Greek meaning "ancient", and , meaning "feather" or "wing"...

, from the Late Jurassic
Jurassic
The Jurassic is a geologic period and system that extends from about Mya to  Mya, that is, from the end of the Triassic to the beginning of the Cretaceous. The Jurassic constitutes the middle period of the Mesozoic era, also known as the age of reptiles. The start of the period is marked by...

 period, though Archaeopteryx is not commonly considered to have been a true bird. Modern phylogenies place birds in the dinosaur clade
Clade
A clade is a group consisting of a species and all its descendants. In the terms of biological systematics, a clade is a single "branch" on the "tree of life". The idea that such a "natural group" of organisms should be grouped together and given a taxonomic name is central to biological...

 Theropoda
Theropoda
Theropoda is both a suborder of bipedal saurischian dinosaurs, and a clade consisting of that suborder and its descendants . Dinosaurs belonging to the suborder theropoda were primarily carnivorous, although a number of theropod groups evolved herbivory, omnivory, and insectivory...

. According to the current consensus, Aves and a sister group, the order
Order (biology)
In scientific classification used in biology, the order is# a taxonomic rank used in the classification of organisms. Other well-known ranks are life, domain, kingdom, phylum, class, family, genus, and species, with order fitting in between class and family...

 Crocodilia
Crocodilia
Crocodilia is an order of large reptiles that appeared about 84 million years ago in the late Cretaceous Period . They are the closest living relatives of birds, as the two groups are the only known survivors of the Archosauria...

, together are the sole living members of an unranked "reptile
Reptile
Reptiles are members of a class of air-breathing, ectothermic vertebrates which are characterized by laying shelled eggs , and having skin covered in scales and/or scutes. They are tetrapods, either having four limbs or being descended from four-limbed ancestors...

" clade, the Archosauria
Archosaur
Archosaurs are a group of diapsid amniotes whose living representatives consist of modern birds and crocodilians. This group also includes all extinct non-avian dinosaurs, many extinct crocodilian relatives, and pterosaurs. Archosauria, the archosaur clade, is a crown group that includes the most...

.

Phylogenetically
Phylogenetics
In biology, phylogenetics is the study of evolutionary relatedness among groups of organisms , which is discovered through molecular sequencing data and morphological data matrices...

, Aves is usually defined as all descendants of the most recent common ancestor of a specific modern bird species (such as the House Sparrow
House Sparrow
The House Sparrow is a bird of the sparrow family Passeridae, found in most parts of the world. One of about 25 species in the genus Passer, the House Sparrow occurs naturally in most of Europe, the Mediterranean region, and much of Asia...

, Passer domesticus), and either Archaeopteryx
Archaeopteryx
Archaeopteryx , sometimes referred to by its German name Urvogel , is a genus of theropod dinosaur that is closely related to birds. The name derives from the Ancient Greek meaning "ancient", and , meaning "feather" or "wing"...

, or some prehistoric species closer to Neornithes (to avoid the problems caused by the unclear relationships of Archaeopteryx to other theropods). If the latter classification is used then the larger group is termed Avialae. Currently, the relationship between dinosaurs, Archaeopteryx, and modern birds is still under debate.

Origins

There is significant evidence that birds evolved from theropod
Theropoda
Theropoda is both a suborder of bipedal saurischian dinosaurs, and a clade consisting of that suborder and its descendants . Dinosaurs belonging to the suborder theropoda were primarily carnivorous, although a number of theropod groups evolved herbivory, omnivory, and insectivory...

 dinosaurs, specifically, that birds are members of Maniraptora
Maniraptora
Maniraptora is a clade of coelurosaurian dinosaurs which includes the birds and the dinosaurs that were more closely related to them than to Ornithomimus velox. It contains the major subgroups Avialae, Deinonychosauria, Oviraptorosauria and Therizinosauria. Ornitholestes and the Alvarezsauroidea...

, a group of theropods which includes dromaeosaurs and oviraptorids
Oviraptoridae
Oviraptoridae is a group of bird-like, herbivorous and omnivorous maniraptoran dinosaurs. Oviraptorids are characterized by their toothless, parrot-like beaks and, in some cases, elaborate crests. They were generally small, measuring between one and two metres long in most cases, though some...

, among others. As more non-avian theropods that are closely related to birds are discovered, the formerly clear distinction between non-birds and birds becomes less so. This was noted already in the 19th century, with Thomas Huxley
Thomas Huxley
Thomas Henry Huxley PC FRS was an English biologist, known as "Darwin's Bulldog" for his advocacy of Charles Darwin's theory of evolution....

 writing:

We have had to stretch the definition of the class of birds so as to include birds with teeth and birds with paw-like fore limbs and long tails. There is no evidence that Compsognathus possessed feathers; but, if it did, it would be hard indeed to say whether it should be called a reptilian bird or an avian reptile.


Recent discoveries in northeast China
People's Republic of China
China , officially the People's Republic of China , is the most populous country in the world, with over 1.3 billion citizens. Located in East Asia, the country covers approximately 9.6 million square kilometres...

 (Liaoning
Liaoning
' is a province of the People's Republic of China, located in the northeast of the country. Its one-character abbreviation is "辽" , a name taken from the Liao River that flows through the province. "Níng" means "peace"...

 Province), demonstrating that many small theropod dinosaurs did indeed have feathers
Feathered dinosaurs
The realization that dinosaurs are closely related to birds raised the obvious possibility of feathered dinosaurs. Fossils of Archaeopteryx include well-preserved feathers, but it was not until the early 1990s that clearly non-avialan dinosaur fossils were discovered with preserved feathers...

, among them Compsognathus
Compsognathus
Compsognathus was a small, bipedal, carnivorous theropod dinosaur. The animal was the size of a turkey and lived around 150 million years ago, the early Tithonian stage of the late Jurassic Period, in what is now Europe. Paleontologists have found two well-preserved fossils, one in Germany...

. This has contributed to this ambiguity of where to draw the line between birds and reptiles. The recently (2002) discovered dromaeosaur Cryptovolans (which may be a Microraptor
Microraptor
Microraptor is a genus of small, four-winged dromaeosaurid dinosaurs. Numerous well-preserved fossil specimens have been recovered from Liaoning, China...

) was capable of powered flight, possessed a sternal keel
Keel (bird)
A keel or carina in bird anatomy is an extension of the sternum which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs. The keel provides an anchor to which a bird's wing muscles attach, thereby providing adequate leverage for flight...

 and had ribs with uncinate processes
Uncinate processes of ribs
The uncinate processes of the ribs are extensions of bone that in birds project caudally from the vertical segment of each rib. These processes help to strengthen the rib cage of birds by overlapping with the rib behind them...

. In fact, Cryptovolans makes a better "bird" than Archaeopteryx
Archaeopteryx
Archaeopteryx , sometimes referred to by its German name Urvogel , is a genus of theropod dinosaur that is closely related to birds. The name derives from the Ancient Greek meaning "ancient", and , meaning "feather" or "wing"...

 which lacks some of these modern bird features. Because of this, some paleontologists have suggested that dromaeosaurs are actually basal birds whose larger members are secondarily flightless, i.e. that dromaeosaurs evolved from birds and not the other way around. Evidence for this theory is currently inconclusive, but digs continue to unearth fossils (especially in China) of the strange feathered dromaeosaurs. At any rate, it is fairly certain that flight utilizing feathered wings existed in the mid-Jurassic theropods.

Although ornithischia
Ornithischia
Ornithischia or Predentata is an extinct order of beaked, herbivorous dinosaurs. The name ornithischia is derived from the Greek ornitheos meaning 'of a bird' and ischion meaning 'hip joint'...

n (bird-hipped) dinosaurs share the same hip structure as birds, birds actually originated from the saurischia
Saurischia
Saurischia meaning 'lizard' and ischion meaning 'hip joint') is one of the two orders, or basic divisions, of dinosaurs. In 1888, Harry Seeley classified dinosaurs into two orders, based on their hip structure...

n (lizard-hipped) dinosaurs if the dinosaurian origin theory is correct. They thus arrived at their hip structure condition independently
Analogy (biology)
An analogy is a trait or an organ that appears similar in two unrelated organisms. The cladistic term for the same phenomenon is homoplasy, from Greek for same form. Biological anologies are often the result of convergent evolution....

. In fact, a bird-like hip structure also developed a third time among a peculiar group of theropods, the Therizinosauridae
Therizinosauridae
Therizinosauridae is a family of advanced herbivorous or omnivorous theropod dinosaurs. Therizinosaurid fossil remains have been recovered from mid-late Cretaceous Period deposits from Mongolia, China, and the United States.-Classification:...

.

An alternate theory to the dinosaurian origin of birds, espoused by a few scientists, notably Larry Martin
Larry Martin
Larry Martin is an American vertebrate paleontologist and curator of the Natural History Museum and Biodiversity Research Center at the University of Kansas. Among Martin's work is research on the Triassic reptile Longisquama and theropod dinosaur Caudipteryx...

 and Alan Feduccia
Alan Feduccia
Alan Feduccia is a paleornithologist, specializing in the origins and phylogeny of birds. He is now Professor Emeritus at the University of North Carolina. Feduccia's principal authored works include two books, The Age of Birds and The Origin and Evolution of Birds, and numerous papers in various...

, states that birds (including maniraptora
Maniraptora
Maniraptora is a clade of coelurosaurian dinosaurs which includes the birds and the dinosaurs that were more closely related to them than to Ornithomimus velox. It contains the major subgroups Avialae, Deinonychosauria, Oviraptorosauria and Therizinosauria. Ornitholestes and the Alvarezsauroidea...

n "dinosaurs") evolved from early archosaurs like Longisquama
Longisquama
Longisquama insignis is an extinct lizard-like reptile known only from one poorly preserved and incomplete fossil. It lived during the middle or late Triassic Period, 230-225 million years ago, in what is now Kyrgyzstan...

. This theory is contested by most other paleontologists and experts in feather development and evolution.

Mesozoic birds

The basal bird Archaeopteryx
Archaeopteryx
Archaeopteryx , sometimes referred to by its German name Urvogel , is a genus of theropod dinosaur that is closely related to birds. The name derives from the Ancient Greek meaning "ancient", and , meaning "feather" or "wing"...

, from the Jurassic
Jurassic
The Jurassic is a geologic period and system that extends from about Mya to  Mya, that is, from the end of the Triassic to the beginning of the Cretaceous. The Jurassic constitutes the middle period of the Mesozoic era, also known as the age of reptiles. The start of the period is marked by...

, is well known as one of the first "missing links
Transitional fossil
A transitional fossil is any fossilized remains of a lifeform that exhibits characteristics of two distinct taxonomic groups. A transitional fossil is the fossil of an organism near the branching point where major individual lineages diverge...

" to be found in support of evolution
Evolution
Evolution is any change across successive generations in the heritable characteristics of biological populations. Evolutionary processes give rise to diversity at every level of biological organisation, including species, individual organisms and molecules such as DNA and proteins.Life on Earth...

 in the late 19th century. Though it is not considered a direct ancestor of modern birds, it gives a fair representation of how flight evolved and how the very first bird might have looked. It may be predated by Protoavis texensis
Protoavis
Protoavis is a problematic taxon of archosaurian known from fragmentary remains from Late Triassic Norian stage deposits near Post, Texas. Much controversy remains over the animal, and there are many different interpretations of what Protoavis actually is...

, though the fragmentary nature of this fossil leaves it open to considerable doubt whether this was a bird ancestor. The skeleton of all early bird candidates is basically that of a small theropod dinosaur with long, clawed hands, though the exquistit preservation of the Solnhofen Plattenkalk shows Archaeopteryx was covered in feathers and had wings. While Archaeopteryx and its relatives may not have been very good fliers, they would at least be competent gliders, setting the stage for the evolution of life on the wing.

The evolutionary trend among birds have been the reduction of anatomical elements to save weight. The first element to disappear was the bony tail, being reduced to a pygostyle
Pygostyle
Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these....

 and the tail function taken over by feathers. Confuciusornis
Confuciusornis
Confuciusornis is a genus of primitive crow-sized birds from the Early Cretaceous Yixian and Jiufotang Formations of China, dating from 125 to 120 million years ago...

 is an example of their trend. While keeping the clawed fingers, perhaps for climbing, it had a pygostyle tail, though longer than in modern birds. A large group of birds, the Enantiornithes
Enantiornithes
Enantiornithes is an extinct group of primitive birds. They were the most abundant and diverse avialans of the Mesozoic. Almost all retained teeth and clawed fingers on each wing, but otherwise looked much like modern birds externally. Over 50 species of Enantiornithines have been named, but some...

, evolved into ecological niche
Ecological niche
In ecology, a niche is a term describing the relational position of a species or population in its ecosystem to each other; e.g. a dolphin could potentially be in another ecological niche from one that travels in a different pod if the members of these pods utilize significantly different food...

s similar to those of modern birds and flourished throughout the Mesozoic. Though their wings resembled those of many modern bird groups, they retained the clawed wings and a snout with teeth rather than a beak in most forms.

The Cretaceous
Cretaceous
The Cretaceous , derived from the Latin "creta" , usually abbreviated K for its German translation Kreide , is a geologic period and system from circa to million years ago. In the geologic timescale, the Cretaceous follows the Jurassic period and is followed by the Paleogene period of the...

 saw the rise of more modern birds with a more rigid ribcage with a carina and shoulders able to allow for a powerful upstroke, essential to sustained powered flight. They also had a more derived pygostyle, with a ploughshare
Ploughshare
A ploughshare or plowshare is a component of a plough or plow.Ploughshare or Plowshare may also refer to:* Operation Plowshare, United States project to use nuclear explosives for civilian purposes* vomer, facial bone in the human skull...

-shaped end. An early example is Yanornis
Yanornis
Yanornis is an extinct genus of omnivorous Early Cretaceous birds, thought to be closely related to the common ancestor of all modern birds. One species, Yanornis martini,...

. Many were coastal birds, strikingly resembling modern shorebirds, like Ichthyornis
Ichthyornis
Ichthyornis is a genus of toothed seabirds from the Late Cretaceous of North America. Its fossil remains are known from the chalks of Alberta, Alabama, Kansas, New Mexico, Saskatchewan, and Texas, in strata that were laid down in the Western Interior Seaway during the Turonian-Campanian ages,...

, or ducks, like Gansus
Gansus
Gansus is a genus of aquatic birds that lived during the Aptian or Albian age of the Early Cretaceous period in what is now Gansu province, western China...

. Some evolved as swimming hunters, like the Hesperornithiformes
Hesperornithiformes
Hesperornithes is an extinct and highly specialized clade of Cretaceous toothed birds. Hesperornithine birds, apparently limited to former aquatic habitats in the Northern Hemisphere, include genera such as Hesperornis, Parahesperornis, Baptornis, Enaliornis, and probably Potamornis, all...

 - a group of flightless divers resembling grebe
Grebe
A grebe is a member of the Podicipediformes order, a widely distributed order of freshwater diving birds, some of which visit the sea when migrating and in winter...

s and loon
Loon
The loons or divers are a group of aquatic birds found in many parts of North America and northern Eurasia...

s. While modern in most respects, most of these birds retained typical reptilian-like teeth.

The modern toothless birds evolved from the toothed forefathers in the Cretaceous. While the earlier primitive birds, particularly the Enantiornithes continued to thrive and diversify alongside the pterosaur
Pterosaur
Pterosaurs were flying reptiles of the clade or order Pterosauria. They existed from the late Triassic to the end of the Cretaceous Period . Pterosaurs are the earliest vertebrates known to have evolved powered flight...

s, all but a few groups of the toothless Neornithes were cut short at the Cretaceous-Tertiary extinction event
Cretaceous-Tertiary extinction event
The Cretaceous–Paleogene extinction event, formerly named and still commonly referred to as the Cretaceous-Tertiary extinction event, occurred approximately 65.5 million years ago at the end of the Maastrichtian age of the Cretaceous period. It was a large-scale mass extinction of animal and plant...

. The surviving lineages of birds were the comparatively primitive paleognathae
Paleognathae
The Palaeognathae or paleognaths are one of the two living superorders of birds. The other living superorder is Neognathae. Together these two clades form the subclass Neornithes....

 (ostrich
Ostrich
The Ostrich is one or two species of large flightless birds native to Africa, the only living member of the genus Struthio. Some analyses indicate that the Somali Ostrich may be better considered a full species apart from the Common Ostrich, but most taxonomists consider it to be a...

 and its allies), the aquatic duck lineage
Galliformes
Galliformes are an order of heavy-bodied ground-feeding domestic or game bird, containing turkey, grouse, chicken, New and Old World Quail, ptarmigan, partridge, pheasant, and the Cracidae. Common names are gamefowl or gamebirds, landfowl, gallinaceous birds or galliforms...

, the terrestrial fowl
Galliformes
Galliformes are an order of heavy-bodied ground-feeding domestic or game bird, containing turkey, grouse, chicken, New and Old World Quail, ptarmigan, partridge, pheasant, and the Cracidae. Common names are gamefowl or gamebirds, landfowl, gallinaceous birds or galliforms...

 and the highly volant Neoaves.

Adaptive radiation of modern birds

Modern birds are classified in Neornithes, which are now known to have evolved into some basic lineages by the end of the Cretaceous (see Vegavis
Vegavis
Vegavis is a genus of extinct bird that lived during the Late Cretaceous of Antarctica, some 65 mya. It belonged to the clade Anseriformes...

). The Neornithes are split into the paleognaths and neognaths.

Paleognathae
Paleognathae
The Palaeognathae or paleognaths are one of the two living superorders of birds. The other living superorder is Neognathae. Together these two clades form the subclass Neornithes....



The paleognaths include the tinamou
Tinamou
The tinamous are a family comprising 47 species of birds found in Central and South America. One of the most ancient living groups of bird, they are related to the ratites. Generally ground dwelling, they are found in a range of habitats....

s (found only in Central and South America) and the ratite
Ratite
A ratite is any of a diverse group of large, flightless birds of Gondwanan origin, most of them now extinct. Unlike other flightless birds, the ratites have no keel on their sternum—hence the name from the Latin ratis...

s which nowadays are found almost exclusively on the Southern Hemisphere. The ratites are large flightless birds, and include ostrich
Ostrich
The Ostrich is one or two species of large flightless birds native to Africa, the only living member of the genus Struthio. Some analyses indicate that the Somali Ostrich may be better considered a full species apart from the Common Ostrich, but most taxonomists consider it to be a...

es, rhea
Rhea (bird)
The rheas are ratites in the genus Rhea, native to South America. There are two existing species: the Greater or American Rhea and the Lesser or Darwin's Rhea. The genus name was given in 1752 by Paul Möhring and adopted as the English common name. Möhring's reason for choosing this name, from the...

s, cassowaries
Cassowary
The cassowaries are ratites, very large flightless birds in the genus Casuarius native to the tropical forests of New Guinea, nearby islands and northeastern Australia. There are three extant species recognized today...

, kiwi
Kiwi
Kiwi are flightless birds endemic to New Zealand, in the genus Apteryx and family Apterygidae.At around the size of a domestic chicken, kiwi are by far the smallest living ratites and lay the largest egg in relation to their body size of any species of bird in the world...

s and emu
Emu
The Emu Dromaius novaehollandiae) is the largest bird native to Australia and the only extant member of the genus Dromaius. It is the second-largest extant bird in the world by height, after its ratite relative, the ostrich. There are three subspecies of Emus in Australia...

s. A few scientists propose that the ratites represent an artificial grouping of birds which have independently lost the ability to fly in a number of unrelated lineages; in any case, the available data regarding their evolution is still very confusing. Speculation based on these studies is elaborated in an article on Science Daily. Dr. Matthew Phillips published some of the original research on ratite diversity in Systematic Biology.

Neognathae
Neognathae
Neognaths are birds within the subclass Neornithes of the class Aves. The Neognathae include virtually all living birds; their sister taxon Palaeognathae contains the tinamous and the flightless ratites....



The basal divergence from the remaining Neognathes was that of the Galloanserae, the superorder containing the Anseriformes
Anseriformes
The order Anseriformes contains about 150 living species of birds in three extant families: the Anhimidae , Anseranatidae , and the Anatidae, which includes over 140 species of waterfowl, among them the ducks, geese, and swans.All species in the order are highly adapted for an aquatic existence at...

 (duck
Duck
Duck is the common name for a large number of species in the Anatidae family of birds, which also includes swans and geese. The ducks are divided among several subfamilies in the Anatidae family; they do not represent a monophyletic group but a form taxon, since swans and geese are not considered...

s, geese
Goose
The word goose is the English name for a group of waterfowl, belonging to the family Anatidae. This family also includes swans, most of which are larger than true geese, and ducks, which are smaller....

 and swan
Swan
Swans, genus Cygnus, are birds of the family Anatidae, which also includes geese and ducks. Swans are grouped with the closely related geese in the subfamily Anserinae where they form the tribe Cygnini. Sometimes, they are considered a distinct subfamily, Cygninae...

s), and the Galliformes
Galliformes
Galliformes are an order of heavy-bodied ground-feeding domestic or game bird, containing turkey, grouse, chicken, New and Old World Quail, ptarmigan, partridge, pheasant, and the Cracidae. Common names are gamefowl or gamebirds, landfowl, gallinaceous birds or galliforms...

 (chicken
Chicken
The chicken is a domesticated fowl, a subspecies of the Red Junglefowl. As one of the most common and widespread domestic animals, and with a population of more than 24 billion in 2003, there are more chickens in the world than any other species of bird...

s, turkey
Turkey (bird)
A turkey is a large bird in the genus Meleagris. One species, Meleagris gallopavo, commonly known as the Wild Turkey, is native to the forests of North America. The domestic turkey is a descendant of this species...

s, pheasant
Pheasant
Pheasants refer to some members of the Phasianinae subfamily of Phasianidae in the order Galliformes.Pheasants are characterised by strong sexual dimorphism, males being highly ornate with bright colours and adornments such as wattles and long tails. Males are usually larger than females and have...

s, and their allies).

The dates for the splits are a matter of considerable debate amongst scientists. It is agreed that the Neornithes evolved in the Cretaceous and that the split between the Galloanserae and the other neognaths - the Neoaves - occurred before the K-T extinction event
Cretaceous-Tertiary extinction event
The Cretaceous–Paleogene extinction event, formerly named and still commonly referred to as the Cretaceous-Tertiary extinction event, occurred approximately 65.5 million years ago at the end of the Maastrichtian age of the Cretaceous period. It was a large-scale mass extinction of animal and plant...

, but there are different opinions about whether the radiation of the remaining neognaths occurred before or after the extinction of the other dinosaurs. This disagreement is in part caused by a divergence in the evidence, with molecular dating suggesting a Cretaceous radiation, a small and equivocal neoavian fossil
Fossil
Fossils are the preserved remains or traces of animals , plants, and other organisms from the remote past...

 record from Cretaceous, and most living families turning up during the Paleogene
Paleogene
The Paleogene is a geologic period and system that began 65.5 ± 0.3 and ended 23.03 ± 0.05 million years ago and comprises the first part of the Cenozoic Era...

. Attempts made to reconcile the molecular and fossil evidence have proved controversial.

On the other hand, two factors must be considered: First, molecular clock
Molecular clock
The molecular clock is a technique in molecular evolution that uses fossil constraints and rates of molecular change to deduce the time in geologic history when two species or other taxa diverged. It is used to estimate the time of occurrence of events called speciation or radiation...

s cannot be considered reliable in the absence of robust fossil calibration, whereas the fossil record is naturally incomplete. Second, in reconstructed phylogenetic trees, the time and pattern of lineage separation corresponds to the evolution of the characters (such as DNA sequences, morphological traits etc.) studied, not to the actual evolutionary pattern of the lineages; these ideally should not differ by much, but may well do so in practice.

Considering this, it is easy to see that fossil data, compared to molecular data, tends to be more accurate in general, but also to underestimate divergence times: morphological traits, being the product of entire developmental genetics networks, usually only start to diverge
Divergent evolution
Divergent evolution is the accumulation of differences between groups which can lead to the formation of new species, usually a result of diffusion of the same species to different and isolated environments which blocks the gene flow among the distinct populations allowing differentiated fixation...

 some time after a lineage split would become apparent in DNA sequence comparison - especially if the sequences used contain many silent mutation
Silent mutation
Silent mutations are DNA mutations that do not result in a change to the amino acid sequence of a protein. They may occur in a non-coding region , or they may occur within an exon in a manner that does not alter the final amino acid sequence...

s.

Classification of modern species

See also: Sibley-Ahlquist taxonomy
Sibley-Ahlquist taxonomy
The Sibley-Ahlquist taxonomy is a bird taxonomy proposed by Charles Sibley and Jon Edward Ahlquist. It is based on DNA-DNA hybridization studies conducted in the late 1970s and throughout the 1980s....

 and dinosaur classification
Dinosaur classification
Dinosaur classification began in 1842 when Sir Richard Owen placed Iguanodon, Megalosaurus, and Hylaeosaurus in "a distinct tribe or suborder of Saurian Reptiles, for which I would propose the name of Dinosauria." In 1887 and 1888 Harry Seeley divided dinosaurs into the two orders Saurischia and...


The phylogenetic classification of birds is a contentious issue. Sibley
Charles Sibley
Charles Gald Sibley was an American ornithologist and molecular biologist. He had an immense influence on the scientific classification of birds, and the work that Sibley initiated has substantially altered our understanding of the evolutionary history of modern birds.Sibley's taxonomy has been a...

 & Ahlquist's Phylogeny and Classification of Birds (1990) is a landmark work on the classification of birds (although frequently debated and constantly revised). A preponderance of evidence suggests that most modern bird orders constitute good clades. However, scientists are not in agreement as to the precise relationships between the orders; evidence from modern bird anatomy, fossils and DNA have all been brought to bear on the problem but no strong consensus has emerged. As of the mid-2000s, new fossil and molecular data provide an increasingly clear picture of the evolution of modern bird orders, and their relationships. For example, the Charadriiformes
Charadriiformes
Charadriiformes is a diverse order of small to medium-large birds. It includes about 350 species and has members in all parts of the world. Most Charadriiformes live near water and eat invertebrates or other small animals; however, some are pelagic , some occupy deserts and a few are found in thick...

 seem to consititute an ancient and distinct lineage, while the Mirandornithes
Mirandornithes
Mirandornithes is a clade that consists of flamingos and grebes. The relationships of both groups have been problematic. Flamingos had been placed with numerous branches within Neognathae, such as ducks and storks. The grebes had been placed with the loons. However recent studies seem to confirm...

 and Cypselomorphae
Cypselomorphae
Cypselomorphae is a clade of birds. It includes the living families and orders Caprimulgidae , Nyctibiidae , Apodiformes , as well as the Aegotheliformes whose distinctness was only recently realized...

 are supported by a wealth of anatomical and molecular evidence. Our understanding of the interrelationships of lower level taxa also continues to increase, particularly in the massively diverse perching bird order Passeriformes.

On June 27, 2008, the largest study of bird genetics was published. It overturns several hypothesized relationships, and will likely necessitate a wholesale restructuring of the avian phylogenetic tree.

Current evolutionary trends in birds

See also: Bird conservation
Bird conservation
Bird conservation is a field in the science of conservation biology related to threatened birds. Humans have had a profound effect on many bird species...



Evolution generally occurs at a scale far too slow to be witnessed by humans. However, bird species are currently going extinct at a far greater rate than any possible speciation or other generation of new species. The disappearance of a population, subspecies, or species represents the permanent loss of a range of genes.

Another concern with evolutionary implications is a suspected increase in hybridization. This may arise from human alteration of habitats enabling related allopatric species to overlap. Forest fragmentation
Forest fragmentation
Forest fragmentation is a form of habitat fragmentation, occurring when forests are cut down in a manner that leaves relatively small, isolated patches of forest known as forest fragments or forest remnants. The intervening matrix that separates the remaining woodland patches can be natural open...

 can create extensive open areas, connecting previously isolated patches of open habitat. Populations that were isolated for sufficient time to diverge significantly, but not sufficient to be incapable of producing fertile offspring may now be interbreeding so broadly that the integrity of the original species may be compromised. For example, the many hybrid hummingbird
Hummingbird
Hummingbirds are birds that comprise the family Trochilidae. They are among the smallest of birds, most species measuring in the 7.5–13 cm range. Indeed, the smallest extant bird species is a hummingbird, the 5-cm Bee Hummingbird. They can hover in mid-air by rapidly flapping their wings...

s found in northwest South America may represent a threat to the conservation of the distinct species involved.

Several species of birds have been bred in captivity to create variations on wild species. In some birds this is limited to color variations, while others are bred for larger egg or meat production, for flightlessness or other characteristics.

Some species, like the rock pigeon or several species of crows have been successful living in man made environments. Because these new habitats are different from their far less numerous "natural" habitats, these species are to a certain extent displaying evolutionary adaptations to living close to man, including color changes, increased memory, and enhanced intelligence.
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