Channelomics
Encyclopedia
Channelomics is a newly emerging term for the study of membrane channels, that is; ion channels and porins (the "channelome
"). It is therefore a branch of physiology
, biophysics
and pharmacology
. The term is not used widely and it is therefore perhaps questionable as to whether it will catch on. Channelomics particularly includes study of the gene expression
, structure and function of ion channels.
for physiology
for Prof Roderick MacKinnon
.
electrophysiology
with pharmacology
. The process by which membrane channel
function is altered by drugs and biochemicals is termed "channel modulation". Functional channelomic studies also includes study of diseases resulting from their mis-function. Such a disease is termed a channelopathy
.
or proteomics
; however, perhaps the most important technology used almost exclusively for channelomics is the patch clamp
branch of electrophysiology
.
Channelome
The channelome, sometimes "ion channelome", is an expression used to describe the complete set of ion channels expressed in a biological tissue or organism. It is analogous to the genome, the metabolome , the proteome , the microbiome etc...
"). It is therefore a branch of physiology
Physiology
Physiology is the science of the function of living systems. This includes how organisms, organ systems, organs, cells, and bio-molecules carry out the chemical or physical functions that exist in a living system. The highest honor awarded in physiology is the Nobel Prize in Physiology or...
, biophysics
Biophysics
Biophysics is an interdisciplinary science that uses the methods of physical science to study biological systems. Studies included under the branches of biophysics span all levels of biological organization, from the molecular scale to whole organisms and ecosystems...
and pharmacology
Pharmacology
Pharmacology is the branch of medicine and biology concerned with the study of drug action. More specifically, it is the study of the interactions that occur between a living organism and chemicals that affect normal or abnormal biochemical function...
. The term is not used widely and it is therefore perhaps questionable as to whether it will catch on. Channelomics particularly includes study of the gene expression
Gene expression
Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product. These products are often proteins, but in non-protein coding genes such as ribosomal RNA , transfer RNA or small nuclear RNA genes, the product is a functional RNA...
, structure and function of ion channels.
Structural studies
Structure and functional studies of membrane channels are closely linked, but perhaps the most famous recent work studying the structure of ion channels is the paper by Doyle et al. 1998, which led to the Nobel PrizeNobel Prize
The Nobel Prizes are annual international awards bestowed by Scandinavian committees in recognition of cultural and scientific advances. The will of the Swedish chemist Alfred Nobel, the inventor of dynamite, established the prizes in 1895...
for physiology
Physiology
Physiology is the science of the function of living systems. This includes how organisms, organ systems, organs, cells, and bio-molecules carry out the chemical or physical functions that exist in a living system. The highest honor awarded in physiology is the Nobel Prize in Physiology or...
for Prof Roderick MacKinnon
Roderick MacKinnon
Roderick MacKinnon is a professor of Molecular Neurobiology and Biophysics at Rockefeller University who won the Nobel Prize in Chemistry together with Peter Agre in 2003 for his work on the structure and operation of ion channels....
.
Functional studies
There are a vast array of studies investigating the function of "membrane channels", these frequently combine patch clampPatch clamp
The patch clamp technique is a laboratory technique in electrophysiology that allows the study of single or multiple ion channels in cells. The technique can be applied to a wide variety of cells, but is especially useful in the study of excitable cells such as neurons, cardiomyocytes, muscle...
electrophysiology
Electrophysiology
Electrophysiology is the study of the electrical properties of biological cells and tissues. It involves measurements of voltage change or electric current on a wide variety of scales from single ion channel proteins to whole organs like the heart...
with pharmacology
Pharmacology
Pharmacology is the branch of medicine and biology concerned with the study of drug action. More specifically, it is the study of the interactions that occur between a living organism and chemicals that affect normal or abnormal biochemical function...
. The process by which membrane channel
Membrane channel
A family of biological membrane proteins which allow the passive movement of ions , water or other solutes to passively pass through the membrane down their electrochemical gradient.- References :...
function is altered by drugs and biochemicals is termed "channel modulation". Functional channelomic studies also includes study of diseases resulting from their mis-function. Such a disease is termed a channelopathy
Channelopathy
Channelopathies are diseases caused by disturbed function of ion channel subunits or the proteins that regulate them. These diseases may be either congenital or acquired .There are a large number of distinct dysfunctions known to be caused by ion channel...
.
Technologies
In principle, channelomics uses most of technologies of biochemistryBiochemistry
Biochemistry, sometimes called biological chemistry, is the study of chemical processes in living organisms, including, but not limited to, living matter. Biochemistry governs all living organisms and living processes...
or proteomics
Proteomics
Proteomics is the large-scale study of proteins, particularly their structures and functions. Proteins are vital parts of living organisms, as they are the main components of the physiological metabolic pathways of cells. The term "proteomics" was first coined in 1997 to make an analogy with...
; however, perhaps the most important technology used almost exclusively for channelomics is the patch clamp
Patch clamp
The patch clamp technique is a laboratory technique in electrophysiology that allows the study of single or multiple ion channels in cells. The technique can be applied to a wide variety of cells, but is especially useful in the study of excitable cells such as neurons, cardiomyocytes, muscle...
branch of electrophysiology
Electrophysiology
Electrophysiology is the study of the electrical properties of biological cells and tissues. It involves measurements of voltage change or electric current on a wide variety of scales from single ion channel proteins to whole organs like the heart...
.