Soil biology
Encyclopedia
Soil biology is the study of microbial and fauna
l activity and ecology
in soil
. These organisms include earthworm
s, nematode
s, protozoa
, fungi, bacteria
and different arthropod
s. Soil biology plays a vital role in determining many soil characteristics yet, being a relatively new science, much remains unknown about soil biology and about how the nature of soil is affected.
means any appraisal of soil function must necessarily take into account interactions with the living communities that exist within the soil. We know that soil organisms
break down organic matter
, making nutrients available for uptake by plants and other organisms. The nutrients stored in the bodies of soil organisms prevent nutrient loss by leaching
. Microbial exudates act to maintain soil structure
, and earthworms are important in bioturbation
. However, we find that we don't understand critical aspects about how these populations function and interact. The discovery of glomalin
in 1995 indicates that we lack the knowledge to correctly answer some of the most basic questions about the biogeochemical cycle in soils. We have much work ahead to gain a better understanding of how soil biological components affect us and the planet they share with us.
Complementary disciplinary approaches are necessarily utilized which involve molecular biology
, genetics
, ecophysiology, biogeography
, ecology, soil processes, organic matter, nutrient dynamics and landscape ecology
.
Fauna
Fauna or faunæ is all of the animal life of any particular region or time. The corresponding term for plants is flora.Zoologists and paleontologists use fauna to refer to a typical collection of animals found in a specific time or place, e.g. the "Sonoran Desert fauna" or the "Burgess shale fauna"...
l activity and ecology
Ecology
Ecology is the scientific study of the relations that living organisms have with respect to each other and their natural environment. Variables of interest to ecologists include the composition, distribution, amount , number, and changing states of organisms within and among ecosystems...
in soil
Soil
Soil is a natural body consisting of layers of mineral constituents of variable thicknesses, which differ from the parent materials in their morphological, physical, chemical, and mineralogical characteristics...
. These organisms include earthworm
Earthworm
Earthworm is the common name for the largest members of Oligochaeta in the phylum Annelida. In classical systems they were placed in the order Opisthopora, on the basis of the male pores opening posterior to the female pores, even though the internal male segments are anterior to the female...
s, nematode
Nematode
The nematodes or roundworms are the most diverse phylum of pseudocoelomates, and one of the most diverse of all animals. Nematode species are very difficult to distinguish; over 28,000 have been described, of which over 16,000 are parasitic. It has been estimated that the total number of nematode...
s, protozoa
Protozoa
Protozoa are a diverse group of single-cells eukaryotic organisms, many of which are motile. Throughout history, protozoa have been defined as single-cell protists with animal-like behavior, e.g., movement...
, fungi, bacteria
Bacteria
Bacteria are a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals...
and different arthropod
Arthropod
An arthropod is an invertebrate animal having an exoskeleton , a segmented body, and jointed appendages. Arthropods are members of the phylum Arthropoda , and include the insects, arachnids, crustaceans, and others...
s. Soil biology plays a vital role in determining many soil characteristics yet, being a relatively new science, much remains unknown about soil biology and about how the nature of soil is affected.
Overview
The soil is home to a large proportion of the world's genetic diversity. The linkages between soil organisms and soil functions are observed to be incredibly complex. The interconnectedness and complexity of this soil ‘food web’Soil food web
The soil food web is the community of organisms living all or part of their lives in the soil. It describes a complex living system in the soil and how it interacts with the environment, plants, and animals....
means any appraisal of soil function must necessarily take into account interactions with the living communities that exist within the soil. We know that soil organisms
Soil life
Soil life or soil biota is a collective term for all the organisms living within the soil.-Overview:In balanced soil, plants grow in an active and steady environment. The mineral content of the soil and its heartiful structure are important for their well-being, but it is the life in the earth that...
break down organic matter
Organic matter
Organic matter is matter that has come from a once-living organism; is capable of decay, or the product of decay; or is composed of organic compounds...
, making nutrients available for uptake by plants and other organisms. The nutrients stored in the bodies of soil organisms prevent nutrient loss by leaching
Leaching (pedology)
In pedology, leaching is the loss of mineral and organic solutes due to percolation. It is a mechanism of soil formation. It is distinct from the soil forming process of eluviation, which is the loss of mineral and organic colloids. Leached and elluviated materials tend to be lost from topsoil and...
. Microbial exudates act to maintain soil structure
Soil structure
Soil structure is determined by how individual soil granules clump or bind together and aggregate, and therefore, the arrangement of soil pores between them...
, and earthworms are important in bioturbation
Bioturbation
In oceanography, limnology, pedology, geology , and archaeology, bioturbation is the displacement and mixing of sediment particles and solutes by fauna or flora . The mediators of bioturbation are typically annelid worms , bivalves In oceanography, limnology, pedology, geology (especially...
. However, we find that we don't understand critical aspects about how these populations function and interact. The discovery of glomalin
Glomalin
Glomalin is a glycoprotein produced abundantly on hyphae and spores of arbuscular mycorrhizal fungi in soil and in roots.As a glycoprotein, glomalin stores carbon in both its protein and its carbohydrate subunits. It permeates organic matter, binding it to silt, sand, and clay particles...
in 1995 indicates that we lack the knowledge to correctly answer some of the most basic questions about the biogeochemical cycle in soils. We have much work ahead to gain a better understanding of how soil biological components affect us and the planet they share with us.
Scope
Soil biology involves work in the following areas:- ModellingScientific modellingScientific modelling is the process of generating abstract, conceptual, graphical and/or mathematical models. Science offers a growing collection of methods, techniques and theory about all kinds of specialized scientific modelling...
of biological processes and population dynamicsPopulation dynamicsPopulation dynamics is the branch of life sciences that studies short-term and long-term changes in the size and age composition of populations, and the biological and environmental processes influencing those changes...
. - Soil biology, physicsSoil physicsSoil physics is the study of soil physical properties and processes. It is applied to management and prediction under natural and managed ecosystems. Soil physics deals with the dynamics of physical soil components and their phases as solids, liquids, and gases. It draws on the principles of...
and chemistry: occurrence of physicochemical parameters and surface properties on biological processes and population behavior. - Population biologyPopulation biologyPopulation biology is a study of populations of organisms, especially the regulation of population size, life history traits such as clutch size, and extinction...
and molecular ecologyMolecular ecologyMolecular ecology is a field of evolutionary biology that is concerned with applying molecular population genetics, molecular phylogenetics, and more recently genomics to traditional ecological questions...
: methodological development and contribution to study microbial and faunal populations; diversity and population dynamicsPopulation dynamicsPopulation dynamics is the branch of life sciences that studies short-term and long-term changes in the size and age composition of populations, and the biological and environmental processes influencing those changes...
; genetic transfers, influence of environmental factors. - Community ecology and functioning processes: interactions between organisms and mineralMineralA mineral is a naturally occurring solid chemical substance formed through biogeochemical processes, having characteristic chemical composition, highly ordered atomic structure, and specific physical properties. By comparison, a rock is an aggregate of minerals and/or mineraloids and does not...
or organic compounds; involvement of such interactions in soil pathogenicityPathogenicityPathogenicity is the ability of a pathogen to produce an infectious disease in an organism.It is often used interchangeably with the term "virulence", although virulence is used more specifically to describe the relative degree of damage done by a pathogen, or the degree of pathogenicity caused by...
; transformation of mineral and organic compounds, cycling of elementsBiogeochemical cycleIn ecology and Earth science, a biogeochemical cycle or substance turnover or cycling of substances is a pathway by which a chemical element or molecule moves through both biotic and abiotic compartments of Earth. A cycle is a series of change which comes back to the starting point and which can...
; soil structuration
Complementary disciplinary approaches are necessarily utilized which involve molecular biology
Molecular biology
Molecular biology is the branch of biology that deals with the molecular basis of biological activity. This field overlaps with other areas of biology and chemistry, particularly genetics and biochemistry...
, genetics
Genetics
Genetics , a discipline of biology, is the science of genes, heredity, and variation in living organisms....
, ecophysiology, biogeography
Biogeography
Biogeography is the study of the distribution of species , organisms, and ecosystems in space and through geological time. Organisms and biological communities vary in a highly regular fashion along geographic gradients of latitude, elevation, isolation and habitat area...
, ecology, soil processes, organic matter, nutrient dynamics and landscape ecology
Landscape ecology
Landscape ecology is the science of studying and improving relationships between urban development and ecological processes in the environment and particular ecosystems...
.
External links
- Michigan State University - Soil Ecology and Management: Soil Biology
- New South Wales - Soil Biology Basics
- University of Minnesota - Soil Biology and Soil Management
- Soil-Net.com A free schools-age educational site, featuring much on soil biology and teaching about soil and its importance.