List of sequenced prokaryotic genomes
Encyclopedia
This list of sequenced eubacterial genomes contains all the eubacteria
known to have publicly-available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration
, a public database which can be searched on the web
. A few of the listed genomes may not be in the INSDC database, but in other public databases.
Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed
scientific literature.
For the genomes of archaea see list of sequenced archaeal genomes.
Bacteria
Bacteria are a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals...
known to have publicly-available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration
International Nucleotide Sequence Database Collaboration
The International Nucleotide Sequence Database Collaboration consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. It involves the following computerized databases: DNA Data Bank of Japan , GenBank and the EMBL...
, a public database which can be searched on the web
World Wide Web
The World Wide Web is a system of interlinked hypertext documents accessed via the Internet...
. A few of the listed genomes may not be in the INSDC database, but in other public databases.
Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed
Peer review
Peer review is a process of self-regulation by a profession or a process of evaluation involving qualified individuals within the relevant field. Peer review methods are employed to maintain standards, improve performance and provide credibility...
scientific literature.
For the genomes of archaea see list of sequenced archaeal genomes.
Species | Strain | Type | Base Pairs | Genes | Reference |
---|---|---|---|---|---|
Acidobacteria bacterium | Ellin345 | Acidobacteria Acidobacteria Acidobacteria are a newly devised phylum of Bacteria, whose members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.... |
5,650,368 | 4,777 | Unpublished |
Acinetobacter Acinetobacter Acinetobacter [asz−in−ée−toe–back−ter] is a genus of Gram-negative bacteria belonging to the Gammaproteobacteria. Acinetobacter species are non-motile and oxidase-negative, and occur in pairs under magnification.... sp. |
ADP1 | Proteobacteria Proteobacteria The Proteobacteria are a major group of bacteria. They include a wide variety of pathogens, such as Escherichia, Salmonella, Vibrio, Helicobacter, and many other notable genera.... Gammaproteobacteria Gammaproteobacteria Gammaproteobacteria is a class of several medically, ecologically and scientifically important groups of bacteria, such as the Enterobacteriaceae , Vibrionaceae and Pseudomonadaceae. An exceeding number of important pathogens belongs to this class, e.g... |
3,598,621 | 3,325 | |
Agrobacterium tumefaciens Agrobacterium tumefaciens Agrobacterium tumefaciens is the causal agent of crown gall disease in over 140 species of dicot. It is a rod shaped, Gram negative soil bacterium... |
C58 | Proteobacteria Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the... |
2,841,581 | 2,722 | |
Anabaena Anabaena Anabaena is a genus of filamentous cyanobacteria that exists as plankton. It is known for its nitrogen fixing abilities, and they form symbiotic relationships with certain plants, such as the mosquito fern. They are one of four genera of cyanobacteria that produce neurotoxins, which are harmful to... nostoc |
PCC7120 | Cyanobacteria Nostocales | 6,413,771 | 5,368 | |
Anabaena variabilis | ATCC29413 | Cyanobacteria Nostocales | 6,365,727 | 5,039 | Unpublished |
Anaeromyxobacter dehalogenans | 2CP-C | Proteobacteria delta-epsilon | 5,013,479 | 4,346 | Unpublished |
Anaplasma Anaplasma Anaplasma is a genus of rickettsiales bacteria.Anaplasmas reside in host red blood cells and lead to the disease anaplasmosis. The disease most commonly occurs in tropical areas of the world.... marginale |
StMaries | Proteobacteria Alphaproteobacteria | 1,197,687 | 949 | |
Anaplasma phagocytophilum Anaplasma phagocytophilum Anaplasma phagocytophilum is a gram-negative bacterium that is unusual in its tropism to neutrophils... |
HZ | Proteobacteria Alphaproteobacteria | 1,471,282 | 1,264 | |
Aquifex aeolicus Aquifex aeolicus Aquifex aeolicus is a rod-shaped prokaryote with a length of 2 to 6 micrometers and a diameter of around half a micrometer. It is one of a handful of species in the Aquificae phylum, an unusual group of thermophilic bacteria that are thought to be some of the oldest species of bacteria.A... |
VF5 | Aquificae Aquificae The Aquificae phylum is a diverse collection of bacteria that live in harsh environmental settings. They have been found in hot springs, sulfur pools, and thermal ocean vents. Members of the genus Aquifex, for example, are productive in water between 85 to 95 °C. They are the dominant members of... Aquificae |
1,551,335 | 1,522 | |
Azoarcus sp. | EbN1 | Proteobacteria Betaproteobacteria Betaproteobacteria Betaproteobacteria is a class of Proteobacteria. Betaproteobacteria are, like all Proteobacteria, gram-negative.The Betaproteobacteria consist of several groups of aerobic or facultative bacteria which are often highly versatile in their degradation capacities, but also contain chemolithotrophic... |
4,296,230 | 4,128 | |
Bacillus anthracis Bacillus anthracis Bacillus anthracis is the pathogen of the Anthrax acute disease. It is a Gram-positive, spore-forming, rod-shaped bacterium, with a width of 1-1.2µm and a length of 3-5µm. It can be grown in an ordinary nutrient medium under aerobic or anaerobic conditions.It is one of few bacteria known to... |
Ames | Firmicutes Firmicutes The Firmicutes are a phylum of bacteria, most of which have Gram-positive cell wall structure. A few, however, such as Megasphaera, Pectinatus, Selenomonas and Zymophilus, have a porous pseudo-outer-membrane that causes them to stain Gram-negative... Bacilli |
5,227,293 | 5,311 | |
Bacillus anthracis | Sterne | Firmicutes Bacilli | 5,228,663 | 5,287 | Unpublished |
Bacillus cereus Bacillus cereus Bacillus cereus is an endemic, soil-dwelling, Gram-positive, rod-shaped, beta hemolytic bacterium. Some strains are harmful to humans and cause foodborne illness, while other strains can be beneficial as probiotics for animals... |
ATCC10987 | Firmicutes Bacilli | 5,224,283 | 5,603 | |
Bacillus cereus | ATCC14579 | Firmicutes Bacilli | 5,411,809 | 5,234 | |
Bacillus cereus | ZK | Firmicutes Bacilli | 5,300,915 | 5,134 | Unpublished |
Bacillus Bacillus Bacillus is a genus of Gram-positive, rod-shaped bacteria and a member of the division Firmicutes. Bacillus species can be obligate aerobes or facultative anaerobes, and test positive for the enzyme catalase. Ubiquitous in nature, Bacillus includes both free-living and pathogenic species... clausii |
KSMK16 | Firmicutes Bacilli | 4,303,871 | 4,108 | |
Bacillus halodurans | C125 | Firmicutes Bacilli | 4,202,352 | 4,066 | |
Bacillus licheniformis Bacillus licheniformis Bacillus licheniformis is a bacterium commonly found in the soil. It is found on bird feathers, especially chest and back plumage, and most often in ground-dwelling birds and aquatic species .... |
ATCC14580 | Firmicutes Bacilli | 4,222,334 | 4,152 | |
Bacillus licheniformis | Unspecified | Firmicutes Bacilli | 4,222,645 | 4,196 | |
Bacillus licheniformis | DSM13 | Firmicutes Bacilli | 4,222,645 | 4,196 | |
Bacillus subtilis Bacillus subtilis Bacillus subtilis, known also as the hay bacillus or grass bacillus, is a Gram-positive, catalase-positive bacterium commonly found in soil. A member of the genus Bacillus, B. subtilis is rod-shaped, and has the ability to form a tough, protective endospore, allowing the organism to tolerate... |
168 | Firmicutes Bacilli | 4,214,630 | 4,106 | |
Bacillus thuringiensis Bacillus thuringiensis Bacillus thuringiensis is a Gram-positive, soil-dwelling bacterium, commonly used as a biological pesticide; alternatively, the Cry toxin may be extracted and used as a pesticide. B... |
9727 | Firmicutes Bacilli | 5,237,682 | 5,117 | Unpublished |
Bacteroides fragilis Bacteroides fragilis Bacteroides fragilis is a Gram-negative bacillus bacterium species, and an obligate anaerobe of the gut.B. fragilis group is the most commonly isolated bacteriodaceae in anaerobic infections especially those that originate from the gastrointestinal flora. B. fragilis is the most prevalent organism... |
NCTC9343 | Bacteroidetes Bacteroidetes The phylum Bacteroidetes is composed of three large classes of bacteria that are widely distributed in the environment, including in soil, in sediments, sea water and in the guts and on the skin of animals.... /Chlorobi Bacteroidetes |
5,205,140 | 4,260 | |
Bacteroides fragilis | YCH46 | Bacteroidetes/Chlorobi Bacteroidetes | 5,277,274 | 4,578 | Unpublished |
Bacteroides Bacteroides Bacteroides is a genus of Gram-negative, bacillus bacteria. Bacteroides species are non-endospore-forming, anaerobes, and may be either motile or non-motile, depending on the species. The DNA base composition is 40-48% GC. Unusual in bacterial organisms, Bacteroides membranes contain sphingolipids... thetaiotaomicron |
VPI5482 | Bacteroidetes/Chlorobi Bacteroidetes | 6,260,361 | 4,778 | |
Bartonella henselae Bartonella henselae Bartonella henselae, formerly Rochalimæa, is a proteobacterium that can cause bacteremia, endocarditis, bacillary angiomatosis, and peliosis hepatis. It is also the causative agent of cat-scratch disease which, as the name suggests, occurs after a cat bite or scratch... |
Houston-1 | Proteobacteria Alphaproteobacteria | 1,931,047 | 1,612 | |
Bartonella quintana Bartonella quintana Bartonella quintana, originally known as Rochalimaea quintana, and "Rickettsia quintana", is a microorganism that is transmitted by the human body louse. This microorganism is the caustative agent of trench fever... |
Toulouse | Proteobacteria Alphaproteobacteria | 1,581,384 | 1,308 | |
Baumannia cicadellinicola | Hc | Proteobacteria Gammaproteobacteria | 686,194 | 595 | Unpublished |
Bdellovibrio Bdellovibrio Bdellovibrio is a genus of Gram-negative, obligate aerobic bacteria.One of the more notable characteristics of this genus is that members parasitize other Gram-negative bacteria by entering into their periplasmic space and feeding on the biopolymers, e.g. proteins and nucleic acids, of their hosts... bacteriovorus |
HD100 | Proteobacteria delta-epsilon | 3,782,950 | 3,583 | |
Bifidobacterium longum Bifidobacterium longum Bifidobacterium longum is a species of Gram-positive anaerobic branched rod-shaped bacterium which can be found in the intestines of infant humans. They inhibit the growth of Gram-negative bacteria by producing lactic acid, and digest the complex sugars in human breast milk. Due to its importance,... |
NCC2705 | Acidobacteria | 2,256,640 | 1,727 | |
Blochmannia floridanus | Strain | Proteobacteria Gammaproteobacteria | 705,557 | 589 | |
Blochmannia pennsylvanicus | bpEN | Proteobacteria Gammaproteobacteria | 791,654 | 610 | |
Bordetella bronchiseptica Bordetella bronchiseptica Bordetella bronchiseptica is a small, gram-negative, rod-shaped bacterium of the genus Bordetella. It can cause infectious bronchitis, but rarely infects humans. Closely related to B. pertussis—the obligate human pathogen that causes pertussis or whooping cough—B... |
RB50 | Proteobacteria Betaproteobacteria | 5,339,179 | 5,006 | Unpublished |
Bordetella parapertussis Bordetella parapertussis Bordetella parapertussis is a small Gram-negative bacterium of the genus Bordetella which is adapted to colonise the mammalian respiratory tract. Pertussis caused by B. parapertussis manifests with similar symptoms to B. pertussis-derived disease but tends to be generally less severe. Immunity... |
12822 | Proteobacteria Betaproteobacteria | 4,773,551 | 4,402 | Unpublished |
Bordetella pertussis Bordetella pertussis Bordetella pertussis is a Gram-negative, aerobic coccobacillus of the genus Bordetella, and the causative agent of pertussis or whooping cough. Unlike B. bronchiseptica, B. pertussis is non-motile. Its virulence factors include pertussis toxin, filamentous hæmagglutinin, pertactin, fimbria, and... |
TohamaI | Proteobacteria Betaproteobacteria | 4,086,189 | 3,806 | Unpublished |
Borrelia burgdorferi Borrelia burgdorferi Borrelia burgdorferi is a species of Gram negative bacteria of the spirochete class of the genus Borrelia. B. burgdorferi is predominant in North America, but also exists in Europe, and is the agent of Lyme disease.... |
B31 | Spirochaetes | 910,724 | 850 | |
Borrelia garinii | PBi | Spirochaetes | 904,246 | 832 | |
Bradyrhizobium japonicum | USDA110 | Proteobacteria Alphaproteobacteria | 9,105,828 | 8,317 | |
Brucella abortus | 2308 (chromosome I) | Proteobacteria Alphaproteobacteria | 1,156,948 | 1,164 | |
2308 (chromosome II) | Proteobacteria Alphaproteobacteria | 2,121,359 | 2,186 | ||
Brucella abortus | 9-941 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,124,241 | 2,030 | |
9-941 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,162,204 | 1,055 | ||
Brucella melitensis Brucella melitensis -Introduction:Brucella melitensis is a gram negative coccobacillus bacteria from the Brucellaceae family. The bacterium causes Ovine Brucellosis, along with Brucella ovis. It can infect sheep, cattle, and sometimes humans and it can be transmitted by the stable fly... |
16M (chromosome I) | Proteobacteria Alphaproteobacteria | 2,117,144 | 2,059 | |
16M (chromosome II) | Proteobacteria Alphaproteobacteria | 1,177,787 | 1,139 | ||
Brucella suis | 1330 (chromosome I) | Proteobacteria Alphaproteobacteria | 2,107,794 | 2,123 | |
1330 (chromosome II) | Proteobacteria Alphaproteobacteria | 1,207,381 | 1,150 | ||
Buchnera Buchnera Buchnera can refer to:*Buchnera , a plant genus from the family Orobanchaceae*Buchnera , a genus of proteobacteria... aphidicola |
APS | Proteobacteria Gammaproteobacteria | 640,681 | 564 | |
Buchnera aphidicola | B | Proteobacteria Gammaproteobacteria | 615,980 | 504 | |
Buchnera aphidicola | Sg | Proteobacteria Gammaproteobacteria | 641,454 | 545 | |
Burkholderia cenocepacia Burkholderia cenocepacia Burkholderia cenocepacia is a species of Gram-negative bacteria that is common in the environment and may cause disease in plants. It is an opportunistic pathogen and human infections are common in patients with cystic fibrosis and chronic granulomatous disease, and are often fatal... |
AU1054 | Proteobacteria Betaproteobacteria | 3,294,563 | 2,965 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,788,459 | 2,472 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,196,094 | 1,040 | Unpublished |
Burkholderia mallei Burkholderia mallei Burkholderia mallei is a gram-negative bipolar aerobic bacterium, a Burkholderia-genus human and animal pathogen causing Glanders; the Latin name of this disease gave name to the causative agent species... |
ATCC23344 | Proteobacteria Betaproteobacteria | 3,510,148 | 2,996 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,325,379 | 2,029 | |
Burkholderia pseudomallei Burkholderia pseudomallei Burkholderia pseudomallei is a Gram-negative, bipolar, aerobic, motile rod-shaped bacterium. It infects humans and animals and causes the disease melioidosis. It is also capable of infecting plants.... |
1710b | Proteobacteria Betaproteobacteria | 4,126,292 | 3,736 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,181,762 | 2,611 | Unpublished |
Burkholderia pseudomallei | K96243 (chromosome I) | Proteobacteria Betaproteobacteria | 4,074,542 | 3,460 | |
K96243 (chromosome II) | Proteobacteria Betaproteobacteria | 3,173,005 | 2,395 | ||
Burkholderia species | 383 | Proteobacteria Betaproteobacteria | 3,694,126 | 3,334 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,587,082 | 3,174 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,395,069 | 1,209 | Unpublished |
Burkholderia thailandensis Burkholderia thailandensis Burkholderia thailandensis is a non-fermenting motile Gram-negative bacillus that occurs naturally in soil. It is closely related to Burkholderia pseudomallei, but unlike B. pseudomallei, it only rarely causes disease in humans or animals. The lethal inoculum is approximately 1000 times higher... |
E264 | Proteobacteria Betaproteobacteria | 3,809,201 | 3,276 | |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,914,771 | 2,358 | |
Burkholderia xenovorans Burkholderia xenovorans Burkholderia xenovorans is a species of Proteobacteria.-Genomics:The genome of Burkholderia xenovorans is one of the largest bacterial genomes completely sequenced to date... |
LB400 | Proteobacteria Betaproteobacteria | 4,895,836 | 4,430 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 3,363,523 | 2,960 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 1,471,779 | 1,312 | Unpublished |
Campylobacter jejuni Campylobacter jejuni Campylobacter jejuni is a species of curved, helical-shaped, non-spore forming, Gram-negative, microaerophilic bacteria commonly found in animal feces. It is one of the most common causes of human gastroenteritis in the world. Food poisoning caused by Campylobacter species can be severely... |
NCTC11168 | Proteobacteria delta-epsilon | 1,641,481 | 1,643 | |
Campylobacter jejuni | RM1221 | Proteobacteria delta-epsilon | 1,777,831 | 1,838 | |
Carboxydothermus hydrogenoformans | Z2901 | Firmicutes Clostridia | 2,401,520 | 2,620 | Unpublished |
Carsonella ruddii Candidatus Carsonella ruddii Candidatus Carsonella ruddii is an obligate endosymbiotic Gamma Proteobacterium; it has the smallest genome of any characterised bacteria.... |
PV | Proteobacteria Gammaproteobacteria | 159,662 | 182 | |
Caulobacter crescentus Caulobacter crescentus Caulobacter crescentus is a Gram-negative, oligotrophic bacterium widely distributed in fresh water lakes and streams.Caulobacter is an important model organism for studying the regulation of the cell cycle, asymmetric cell division, and cellular differentiation. Caulobacter daughter cells have... |
CB15 | Proteobacteria Alphaproteobacteria | 4,016,947 | 3,737 | |
Chlamydia muridarum Chlamydia muridarum Chlamydia muridarum is an intracellular bacterial species that at one time belonged to Chlamydia trachomatis. However, C. trachomatis naturally only infects humans and C... |
Nigg | Chlamydiae/Verrucomicrobia Chlamydiae | 1,072,950 | 904 | |
Chlamydia trachomatis Chlamydia trachomatis Chlamydia trachomatis, an obligate intracellular human pathogen, is one of three bacterial species in the genus Chlamydia. C. trachomatis is a Gram-negative bacteria, therefore its cell wall components retain the counter-stain safranin and appear pink under a light microscope.The inclusion bodies... |
AHAR13 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,044,459 | 911 | |
Chlamydia trachomatis | DUW | Chlamydiae/Verrucomicrobia Chlamydiae | 1,042,519 | 894 | |
Chlamydophila abortus Chlamydophila abortus Chlamydophila abortus is a species in Chlamydiae that causes abortion and fetal death in mammals, including humans. Chlamydophila abortus was previously classified as Chlamydia psittaci along with all Chlamydiae except Chlamydia trachomatis. This was based on a lack of evident glycogen production... |
S26-3 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,144,377 | 961 | |
Chlamydophila caviae Chlamydophila caviae Chlamydophila caviae is a bacterium that can be recovered from the conjunctiva of Guinea pigs suffering from ocular inflammation and eye discharge. It is also possible to infect the genital tract of Guinea pigs with C. caviae and elicit a disease that is very similar to human Chlamydia trachomatis... |
GPIC | Chlamydiae Chlamydiae Chlamydiae is a bacterial phylum and class whose members are obligate intracellular pathogens. Many Chlamydiae coexist in an asymptomatic state within specific hosts, and it is widely believed that these hosts provide a natural reservoir for these species.... /Verrucomicrobia Chlamydiae |
1,173,390 | 998 | |
Chlamydophila felis Chlamydophila felis Chlamydophila felis is a bacterium endemic among house cats worldwide, primarily causing inflammation of feline conjunctiva, rhinitis and respiratory problems. C. felis can be recovered from the stomach and reproductive tract. Zoonotic infection of humans with C. felis has been reported... |
FeC56 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,166,239 | 1,005 | Unpublished |
Chlamydophila pneumoniae Chlamydophila pneumoniae Chlamydophila pneumoniae is a species of Chlamydophila, an obligate intracellular bacteria that infects humans and is a major cause of pneumonia.... |
AR39 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,229,853 | 1,110 | |
Chlamydophila pneumoniae | CWL029 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,230,230 | 1,052 | |
Chlamydophila pneumoniae | J138 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,226,565 | 1,069 | |
Chlamydophila pneumoniae | TW183 | Chlamydiae/Verrucomicrobia Chlamydiae | 1,225,935 | 1,113 | Unpublished |
Chlorobium chlorochromatii | CaD3 | Bacteroidetes/Chlorobi Chlorobi | 2,572,079 | 2,002 | Unpublished |
Chlorobium tepidum | TLS | Bacteroidetes/Chlorobi Chlorobi | 2,154,946 | 2,255 | |
Chromobacterium violaceum | ATCC12472 | Proteobacteria Betaproteobacteria | 4,751,080 | 4,407 | |
Chromohalobacter salexigens | DSM3043 | Proteobacteria Gammaproteobacteria | 3,696,649 | 3,298 | Unpublished |
Clostridium acetobutylicum Clostridium acetobutylicum Clostridium acetobutylicum, ATCC 824, is included in the genus Clostridium, is a commercially valuable bacterium sometimes called the "Weizmann Organism", after Jewish-Russian born Chaim Weizmann, then senior lecturer at the University of Manchester, England, used them in 1916 as a bio-chemical... |
ATCC824 | Firmicutes Clostridia | 3,940,880 | 3,672 | |
Clostridium difficile Clostridium difficile Clostridium difficile , also known as "CDF/cdf", or "C... |
QCD-32g58 | Firmicutes Clostridia | 3,840,681 | Unpublished | |
Clostridium perfringens Clostridium perfringens Clostridium perfringens is a Gram-positive, rod-shaped, anaerobic, spore-forming bacterium of the genus Clostridium. C. perfringens is ever present in nature and can be found as a normal component of decaying vegetation, marine sediment, the intestinal tract of humans and other vertebrates,... |
13 | Firmicutes Clostridia | 3,031,430 | 2,660 | |
Clostridium tetani Clostridium tetani Clostridium tetani is a rod-shaped, anaerobic bacterium of the genus Clostridium. Like other Clostridium species, it is Gram-positive, and its appearance on a gram stain resembles tennis rackets or drumsticks. C. tetani is found as spores in soil or in the gastrointestinal tract of animals. C... |
E88 | Firmicutes Clostridia | 2,799,251 | 2,373 | |
Colwellia psychrerythraea | 34H | Proteobacteria Gammaproteobacteria | 5,373,180 | 4,910 | Unpublished |
Corynebacterium diphtheriae Corynebacterium diphtheriae Corynebacterium diphtheriae is a pathogenic bacterium that causes diphtheria. It is also known as the Klebs-Löffler bacillus, because it was discovered in 1884 by German bacteriologists Edwin Klebs and Friedrich Löffler .-Classification:Four subspecies are recognized: C. diphtheriae mitis, C.... |
NCTC13129 | Acidobacteria | 2,488,635 | 2,320 | |
Corynebacterium Corynebacterium Corynebacterium is a genus of Gram-positive rod-shaped bacteria. They are widely distributed in nature and are mostly innocuous. Some are useful in industrial settings such as C. glutamicum. Others can cause human disease. C... efficiens |
YS314 | Acidobacteria | 3,147,090 | 2,942 | |
Corynebacterium glutamicum | ATCC13032 | Acidobacteria | 3,309,401 | 3,099 | Unpublished |
Unspecified | Unspecified | Acidobacteria | 3,282,708 | 3,058 | |
Corynebacterium jeikeium Corynebacterium jeikeium Corynebacterium jeikeium is a rod-shaped, catalase-positive, aerobic species of actinobacteria in the genus Corynebacterium. C. jeikeium is pathogenic, typically causing an opportunistic infection seen most frequently in bone marrow transplant patients.C. jeikeium is usually susceptible to... |
K411 | Acidobacteria | 2,462,499 | 2,104 | |
Coxiella burnetii | RSA493 | Proteobacteria Gammaproteobacteria | 1,995,281 | 2,016 | |
Cyanobacteria bacterium | YellowstoneA | Cyanobacteria Chroococcales | 2,932,766 | 2,760 | |
Cyanobacteria bacterium | YellowstoneB | Cyanobacteria Chroococcales | 3,046,682 | 2,862 | |
Cytophaga hutchinsonii | ATCC33406 | Bacteroidetes/Chlorobi Chlorobi | 4,433,218 | Unpublished | |
Dechloromonas aromatica | RCB | Proteobacteria Betaproteobacteria | 4,501,104 | 4,171 | Unpublished |
Dehalococcoides etheno | 195 | Chloroflexi Dehalococcoidetes | 1,469,720 | 1,580 | |
Dehalococcoides species | CBDB1 | Chloroflexi Dehalococcoidetes | 1,395,502 | 1,458 | |
Deinococcus Deinococcus The Deinococcus is the one genus of three of the Deinococcales group from the Deinococcus-Thermus phylum highly resistant to environmental hazards.There are 47 species of Deinococcus described according to NCBI on 25 august 2011 :... geothermalis |
DSM11300 | Deinococcus-Thermus Deinococci | 2,467,205 | 2,335 | Unpublished |
Deinococcus radiodurans Deinococcus radiodurans Deinococcus radiodurans is an extremophilic bacterium, one of the most radioresistant organisms known. It can survive cold, dehydration, vacuum, and acid, and is therefore known as a polyextremophile and has been listed as the world's toughest bacterium in The Guinness Book Of World Records.-Name... |
R1 | Deinococcus-Thermus Deinococci | 2,648,638 | 2,579 | |
Unspecified | Unspecified | Deinococcus-Thermus Deinococci | 412,348 | 357 | |
Desulfitobacterium hafniense | Y51 | Firmicutes Clostridia | 5,727,534 | 5,060 | |
Desulfotalea psychrophila | LSv54 | Proteobacteria delta-epsilon | 3,523,383 | 3,118 | Unpublished |
Desulfovibrio desulfuricans | G20 | Proteobacteria delta-epsilon | 3,730,232 | 3,775 | Unpublished |
Desulfovibrio vulgaris | Hildenborough | Proteobacteria delta-epsilon | 3,570,858 | 3,379 | |
Ehrlichia canis | Jake | Proteobacteria Alphaproteobacteria | 1,315,030 | 925 | Unpublished |
Ehrlichia chaffeensis | Arkansas | Proteobacteria Alphaproteobacteria | 1,176,248 | 1,105 | |
Ehrlichia ruminantium | Gardel | Proteobacteria Alphaproteobacteria | 1,499,920 | 950 | Unpublished |
Ehrlichia ruminantium | Welgevonden | Proteobacteria Alphaproteobacteria | 1,512,977 | 958 | Unpublished |
Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 1,516,355 | 920 | |
Enterococcus faecalis | V583 | Firmicutes Bacilli | 3,218,031 | 3,113 | |
Erwinia carotovora | SCRI1043 | Proteobacteria Gammaproteobacteria | 5,064,019 | 4,492 | Unpublished |
Erythrobacter litoralis | HTCC2594 | Proteobacteria Alphaproteobacteria | 3,052,398 | 3,011 | Unpublished |
Escherichia coli Escherichia coli Escherichia coli is a Gram-negative, rod-shaped bacterium that is commonly found in the lower intestine of warm-blooded organisms . Most E. coli strains are harmless, but some serotypes can cause serious food poisoning in humans, and are occasionally responsible for product recalls... |
536 | Proteobacteria Gammaproteobacteria | 4,938,920 | 4,685 | Unpublished |
Escherichia coli | CFT073 | Proteobacteria Gammaproteobacteria | 5,231,428 | 5,379 | |
Escherichia coli | K-12 | Proteobacteria Gammaproteobacteria | 4,639,675 | 4,331 | |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 4,646,332 | 4,337 | |
Escherichia coli | O157:H7 | Proteobacteria Gammaproteobacteria | 5,528,445 | 5,349 | |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 5,498,450 | 5,361 | |
Escherichia coli | UTI89 | Proteobacteria Gammaproteobacteria | 5,065,741 | 5,066 | Unpublished |
Francisella tularensis | LVS | Proteobacteria Gammaproteobacteria | 1,895,994 | 1,967 | Unpublished |
Francisella tularensis | SCHUS4 | Proteobacteria Gammaproteobacteria | 1,892,819 | 1,804 | |
Frankia species | CcI3 | Acidobacteria | 5,433,628 | 4,499 | Unpublished |
Fusobacterium nucleatum | ATCC25586 | Fusobacteria Fusobacteria | 2,174,500 | 2,067 | |
Geobacillus kaustophilus | HTA426 | Firmicutes Bacilli | 3,544,776 | 3,498 | |
Geobacter metallireducens | GS15 | Proteobacteria delta-epsilon | 3,997,420 | 3,519 | Unpublished |
Geobacter sulfurreducens | PCA | Proteobacteria delta-epsilon | 3,814,139 | 3,447 | |
Gloeobacter violaceus | PCC7421 | Cyanobacteria Gloeobacteria | 4,659,019 | 4,430 | |
Gluconobacter oxydans | 621H | Proteobacteria Alphaproteobacteria | 2,702,173 | 2,432 | |
Haemophilus ducreyi Haemophilus ducreyi Haemophilus ducreyi is a fastidious gram-negative coccobacillus causing the sexually transmitted disease chancroid, a major cause of genital ulceration in developing countries characterized by painful sores on the genitalia. Another early symptom is dark or light green shears in excrement... |
3500HP | Proteobacteria Gammaproteobacteria | 1,698,955 | 1,717 | Unpublished |
Haemophilus influenzae Haemophilus influenzae Haemophilus influenzae, formerly called Pfeiffer's bacillus or Bacillus influenzae, Gram-negative, rod-shaped bacterium first described in 1892 by Richard Pfeiffer during an influenza pandemic. A member of the Pasteurellaceae family, it is generally aerobic, but can grow as a facultative anaerobe. H... |
86-028NP | Proteobacteria Gammaproteobacteria | 1,913,428 | 1,792 | |
Haemophilus influenzae | Rd | Proteobacteria Gammaproteobacteria | 1,830,138 | 1,709 | |
Hahella chejuensis | KCTC2396 | Proteobacteria Gammaproteobacteria | 7,215,267 | 6,782 | |
Helicobacter Helicobacter Helicobacter is a genus of Gram-negative bacteria possessing a characteristic helix shape. They were initially considered to be members of the Campylobacter genus, but since 1989 they have been grouped in their own genus... hepaticus |
ATCC51449 | Proteobacteria delta-epsilon | 1,799,146 | 1,875 | |
Helicobacter pylori Helicobacter pylori Helicobacter pylori , previously named Campylobacter pyloridis, is a Gram-negative, microaerophilic bacterium found in the stomach. It was identified in 1982 by Barry Marshall and Robin Warren, who found that it was present in patients with chronic gastritis and gastric ulcers, conditions that were... |
26695 | Proteobacteria delta-epsilon | 1,667,867 | 1,566 | |
Helicobacter pylori | HPAG1 | Proteobacteria delta-epsilon | 1,596,366 | 1,536 | Unpublished |
Helicobacter pylori | J99 | Proteobacteria delta-epsilon | 1,643,831 | 1,491 | |
Idiomarina loihiensis | L2TR | Proteobacteria Gammaproteobacteria | 2,839,318 | 2,628 | |
Jannaschia species | CCS1 | Proteobacteria Alphaproteobacteria | 4,317,977 | 4,212 | Unpublished |
Lactobacillus acidophilus Lactobacillus acidophilus Lactobacillus acidophilus is a species in the genus Lactobacillus. L. acidophilus is a homofermentative species, fermenting sugars into lactic acid, which grows readily at rather low pH values and has an optimum growth temperature of 37 °C . L... |
NCFM | Firmicutes Bacilli | 1,993,564 | 1,864 | |
Lactobacillus Lactobacillus Lactobacillus is a genus of Gram-positive facultative anaerobic or microaerophilic rod-shaped bacteria. They are a major part of the lactic acid bacteria group, named as such because most of its members convert lactose and other sugars to lactic acid. They are common and usually benign... delbrueckii |
bulgaricus | Firmicutes Bacilli | 1,864,998 | 2,096 | Unpublished |
Lactobacillus johnsonii | NCC533 | Firmicutes Bacilli | 1,992,676 | 1,821 | |
Lactobacillus plantarum | WCFS1 | Firmicutes Bacilli | 3,308,274 | 3,051 | |
Lactobacillus sakei | 23K | Firmicutes Bacilli | 1,884,661 | 1,885 | Unpublished |
Lactobacillus sakei | sakei23K | Firmicutes Bacilli | 1,884,661 | 1,885 | Unpublished |
Lactobacillus salivarius | UCC118 | Firmicutes Bacilli | 1,827,111 | 1,717 | Unpublished |
Lactococcus lactis | IL1403 | Firmicutes Bacilli | 2,365,589 | 2,266 | |
Lawsonia intracellularis | PHEMN1-00 | Proteobacteria delta-epsilon | 1,719,014 | 1,344 | Unpublished |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 39,794 | 24 | Unpublished |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 194,553 | 104 | Unpublished |
Unspecified | Unspecified | Proteobacteria delta-epsilon | 1,457,619 | 1,187 | Unpublished |
Legionella pneumophila Legionella pneumophila Legionella pneumophila is a thin, ærobic, pleomorphic, flagellated, non-spore forming, Gram-negative bacterium of the genus Legionella. L. pneumophila is the primary human pathogenic bacterium in this group and is the causative agent of legionellosis or Legionnaires' disease.-Characterization:L... |
Lens | Proteobacteria Gammaproteobacteria | 3,345,687 | 2,947 | |
Legionella pneumophila | Paris | Proteobacteria Gammaproteobacteria | 3,503,610 | 3,082 | |
Legionella pneumophila | Philadelphia1 | Proteobacteria Gammaproteobacteria | 3,397,754 | 2,942 | Unpublished |
Leifsonia xyli Leifsonia Leifsonia xyli subsp. xyli is a small, fastidious, Gram-positive, coryneform bacterium that causes ratoon stunting disease, a major worldwide disease of sugarcane.-Classification:... |
CTCB07 | Acidobacteria | 2,584,158 | 2,030 | Unpublished |
Leptospira Leptospira Leptospira is a genus of spirochaete bacteria, including a small number of pathogenic and saprophytic species... interrogans |
56601 | Spirochaetes | 4,332,241 | 4,358 | |
Unspecified | Unspecified | Spirochaetes | 358,943 | 367 | |
Leptospira interrogans | FiocruzL1130 | Spirochaetes | 4,277,185 | 3,394 | |
Unspecified | Unspecified | Spirochaetes | 350,181 | 264 | |
Listeria innocua | Clip11262 | Firmicutes Bacilli | 3,011,208 | 2,981 | |
Listeria monocyto | EGD | Firmicutes Bacilli | 2,944,528 | 2,855 | |
Listeria monocyto | 4b | Firmicutes Bacilli | 2,905,187 | 2,821 | |
Magnetospirillum Magnetospirillum Magnetospirillum is a Gram-negative, microaerophilic genus of magnetotactic bacterium, first isolated from pond water by the microbiologist R. P. Blakemore in 1975. It is characterized by a spirillar, or helical, morphology. It is also a motile bacterium owing to the presence of a polar flagellum... magneticum |
AMB1 | Proteobacteria Alphaproteobacteria | 4,967,148 | 4,559 | |
Mannheimia succiniciproducens | MBEL55E | Proteobacteria Gammaproteobacteria | 2,314,078 | 2,384 | Unpublished |
Mesoplasma florum | L1 | Firmicutes Mollicutes | 793,224 | 683 | Unpublished |
Mesorhizobium loti | MAFF303099 | Proteobacteria Alphaproteobacteria | 7,036,071 | 6,752 | |
Methylobacillus flagellatus | KT | Proteobacteria Betaproteobacteria | 2,971,517 | 2,753 | Unpublished |
Methylococcus capsulatus Methylococcus capsulatus Methylococcus capsulatus is an obligately methanotrophic gram-negative, non-motile coccoid bacterium. M. capsulatus cells are encapsulated and tend to have a diplococcoid arrangement. In addition to methane, M. capsulatus is able to oxidize some organic hydrogen containing compounds such as... |
Bath | Proteobacteria Gammaproteobacteria | 3,304,561 | 2,960 | |
Moorella thermoacetica | ATCC39073 | Firmicutes Clostridia | 2,628,784 | 2,465 | Unpublished |
Mycobacterium Mycobacterium Mycobacterium is a genus of Actinobacteria, given its own family, the Mycobacteriaceae. The genus includes pathogens known to cause serious diseases in mammals, including tuberculosis and leprosy... avium |
k10 | Acidobacteria | 4,829,781 | 4,350 | |
Mycobacterium bovis | AF212297 | Acidobacteria | 4,345,492 | 3,953 | |
Mycobacterium leprae | TN | Acidobacteria | 3,268,203 | 2,720 | |
Mycobacterium tuberculosis Mycobacterium tuberculosis Mycobacterium tuberculosis is a pathogenic bacterial species in the genus Mycobacterium and the causative agent of most cases of tuberculosis . First discovered in 1882 by Robert Koch, M... |
CDC1551 | Acidobacteria | 4,403,837 | 4,189 | Unpublished |
Mycobacterium tuberculosis | H37Rv | Acidobacteria | 4,411,532 | 3,999 | |
Mycoplasma Mycoplasma Mycoplasma refers to a genus of bacteria that lack a cell wall. Without a cell wall, they are unaffected by many common antibiotics such as penicillin or other beta-lactam antibiotics that target cell wall synthesis. They can be parasitic or saprotrophic. Several species are pathogenic in humans,... capricolum |
ATCC27343 | Firmicutes Mollicutes | 1,010,023 | 812 | Unpublished |
Mycoplasma gallisepticum Mycoplasma gallisepticum Mycoplasma gallisepticum is a bacterium belonging to the class Mollicutes and the family Mycoplasmataceae. It is the causative agent of chronic respiratory disease in chickens and infectious sinusitis in turkeys, chickens, game birds, pigeons, and passerine birds of all ages.-Transmission:MG is... |
R | Firmicutes Mollicutes | 996,422 | 726 | |
Mycoplasma genitalium Mycoplasma genitalium Mycoplasma genitalium is a small parasitic bacterium that lives on the ciliated epithelial cells of the primate genital and respiratory tracts. M. genitalium is the smallest known genome that can constitute a cell, and the second-smallest bacterium after the recently-discovered endosymbiont... |
G37 | Firmicutes Mollicutes | 580,076 | 476 | |
Mycoplasma hyopneumoniae Mycoplasma hyopneumoniae -Introduction:Mycoplasma hyopneumoniae is a species of bacteria known to cause the disease Porcine Enzootic Pneumonia, a highly contagious and chronic disease affecting pigs . As with other mollicutes, M... |
232 | Firmicutes Mollicutes | 892,758 | 691 | |
Mycoplasma hyopneumoniae | 7448 | Firmicutes Mollicutes | 920,079 | 663 | |
Mycoplasma hyopneumoniae | J | Firmicutes Mollicutes | 897,405 | 665 | |
Mycoplasma mobile | 163K | Firmicutes Mollicutes | 777,079 | 635 | |
Mycoplasma mycoides | SC | Firmicutes Mollicutes | 1,211,703 | 1,016 | |
Mycoplasma penetrans | HF2 | Firmicutes Mollicutes | 1,358,633 | 1,037 | |
Mycoplasma pneumoniae Mycoplasma pneumoniae Mycoplasma pneumoniae is a very small bacterium in the class Mollicutes.It causes the disease mycoplasma pneumonia, a form of atypical bacterial pneumonia, and is related to cold agglutinin disease.-Cell wall/Treatment:... |
M129 | Firmicutes Mollicutes | 816,394 | 688 | |
Mycoplasma pulmonis | UAB | Firmicutes Mollicutes | 963,879 | 782 | |
Mycoplasma synoviae Mycoplasma synoviae -Introduction:The bacteria M. synoviae is a member of the mycoplasma genus. It causes disease in the joints, bones and respiratory system of birds. It is found throughout the world and infection may be referred to as Infectious Synovitis, Avian Mycoplasmosis, Infectious Sinusitis and Mycoplasma... |
53 | Firmicutes Mollicutes | 799,476 | 672 | |
Myxococcus xanthus | DK1622 | Proteobacteria delta-epsilon | 9,139,763 | 7,331 | Unpublished |
Neisseria gonorrhoeae Neisseria gonorrhoeae Neisseria gonorrhoeae, also known as gonococci , or gonococcus , is a species of Gram-negative coffee bean-shaped diplococci bacteria responsible for the sexually transmitted infection gonorrhea.N... |
FA1090 | Proteobacteria Betaproteobacteria | 2,153,922 | 2,002 | Unpublished |
Neisseria meningitidis Neisseria meningitidis Neisseria meningitidis, often referred to as meningococcus, is a bacterium that can cause meningitis and other forms of meningococcal disease such as meningococcemia, a life threatening sepsis. N. meningitidis is a major cause of morbidity and mortality during childhood in industrialized countries... |
A | Proteobacteria Betaproteobacteria | 2,184,406 | 2,121 | |
Neisseria meningitidis | B | Proteobacteria Betaproteobacteria | 2,272,360 | 2,063 | |
Neorickettsia sennetsu | Miyayama | Proteobacteria Alphaproteobacteria | 859,006 | 932 | |
Nitrobacter Nitrobacter Nitrobacter is genus of mostly rod-shaped, gram-negative, and chemoautotrophic bacteria.Nitrobacter plays an important role in the nitrogen cycle by oxidizing nitrite into nitrate in soil... hamburgensis |
X14 | Proteobacteria Alphaproteobacteria | 4,406,967 | 3,804 | Unpublished |
Nitrobacter winogradskyi | Nb255 | Proteobacteria Alphaproteobacteria | 3,402,093 | 3,122 | Unpublished |
Nitrosococcus oceani | ATCC19707 | Proteobacteria Gammaproteobacteria | 3,481,691 | 2,976 | Unpublished |
Nitrosomonas europaea | Schmidt | Proteobacteria Betaproteobacteria | 2,812,094 | 2,574 | |
Nitrosospira multiformis | ATCC25196 | Proteobacteria Betaproteobacteria | 3,184,243 | 2,757 | Unpublished |
Nocardia farcinica | IFM10152 | Acidobacteria | 6,021,225 | 5,683 | |
Novosphingobium aromaticivorans | DSM12444 | Proteobacteria Alphaproteobacteria | 3,561,584 | 3,324 | Unpublished |
Oceanobacillus iheyensis | HTE831 | Firmicutes Bacilli | 3,630,528 | 3,496 | |
Parachlamy diaspecies | UWE25 | Chlamydiae/Verrucomicrobia Chlamydiae | 2,414,465 | 2,031 | |
Pasteurella multocida | Pm70 | Proteobacteria Gammaproteobacteria | 2,257,487 | 2,014 | |
Pelagibacter ubique Pelagibacter ubique Pelagibacter, with the single species P. ubique, was isolated in 2002 and given a specific name, although it has not yet been validly published according to the bacteriological code. It is an abundant member of the SAR11 clade in the phylum Alphaproteobacteria... |
HTCC1062 | Proteobacteria Alphaproteobacteria | 1,308,759 | 1,354 | |
Pelobacter carbinolicus | DSM2380 | Proteobacteria delta-epsilon | 3,665,893 | 3,119 | Unpublished |
Pelodictyon luteolum | DSM273 | Bacteroidetes/Chlorobi Chlorobi | 2,364,842 | 2,083 | Unpublished |
Photobacterium profundum Photobacterium profundum Photobacterium profundum is a deep sea Gammaproteobacterium, belonging to the family Vibrionaceae and genus Photobacterium. Like other members of this genus, P. profundum is a marine organism and has two circular chromosomes. P... |
SS9 | Proteobacteria Gammaproteobacteria | 4,085,304 | 3,416 | Unpublished |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 2,237,943 | 1,997 | Unpublished |
Photorhabdus luminescens | laumondiiTTO1 | Proteobacteria Gammaproteobacteria | 5,688,987 | 4,905 | Unpublished |
Phytoplas maasteris | AYWB | Firmicutes Mollicutes | 706,569 | 671 | Unpublished |
Phytoplas maasteris | OY | Firmicutes Mollicutes | 860,631 | 754 | |
Polaromonas species | JS666 | Proteobacteria Betaproteobacteria | 5,200,264 | 4,817 | Unpublished |
Porphyromonas gingivalis | W83 | Bacteroidetes/Chlorobi Bacteroidetes | 2,343,476 | 1,909 | |
Prochlorococcus marinus | MED4 | Cyanobacteria Prochlorales | 1,657,990 | 1,716 | |
Prochlorococcus marinus | MIT9312 | Cyanobacteria Prochlorales | 1,709,204 | 1,809 | Unpublished |
Prochlorococcus marinus | MIT9313 | Cyanobacteria Prochlorales | 2,410,873 | 2,273 | |
Prochlorococcus marinus | NATL2A | Cyanobacteria Prochlorales | 1,842,899 | 1,890 | Unpublished |
Prochlorococcus marinus | SS120 | Cyanobacteria Prochlorales | 1,751,080 | 1,882 | |
Propionibacterium acnes | KPA171202 | Acidobacteria | 2,560,265 | 2,297 | Unpublished |
Pseudoalteromonas haloplanktis | TAC125 | Proteobacteria Gammaproteobacteria | 3,214,944 | 2,941 | |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 635,328 | 546 | |
Pseudomonas aeruginosa Pseudomonas aeruginosa Pseudomonas aeruginosa is a common bacterium that can cause disease in animals, including humans. It is found in soil, water, skin flora, and most man-made environments throughout the world. It thrives not only in normal atmospheres, but also in hypoxic atmospheres, and has, thus, colonized many... |
PAO1 | Proteobacteria Gammaproteobacteria | 6,264,403 | 5,566 | |
Pseudomonas Pseudomonas Pseudomonas is a genus of gammaproteobacteria, belonging to the family Pseudomonadaceae containing 191 validly described species.Recently, 16S rRNA sequence analysis has redefined the taxonomy of many bacterial species. As a result, the genus Pseudomonas includes strains formerly classified in the... entomophila |
L48 | Proteobacteria Gammaproteobacteria | 5,888,780 | 5,168 | Unpublished |
Pseudomonas fluorescens | Pf-5 | Proteobacteria Gammaproteobacteria | 7,074,893 | 6,137 | |
Pseudomonas fluorescens | PfO-1 | Proteobacteria Gammaproteobacteria | 6,438,405 | 5,736 | Unpublished |
Pseudomonas putida Pseudomonas putida Pseudomonas putida is a gram-negative rod-shaped saprotrophic soil bacterium. Based on 16S rRNA analysis, P. putida has been placed in the P. putida group, to which it lends its name.... |
KT2440 | Proteobacteria Gammaproteobacteria | 6,181,863 | 5,350 | |
Pseudomonas syringae | B728a | Proteobacteria Gammaproteobacteria | 6,093,698 | 5,136 | |
Pseudomonas syringae Pseudomonas syringae Pseudomonas syringae is a rod shaped, Gram-negative bacterium with polar flagella. It is a plant pathogen which can infect a wide range of plant species, and exists as over 50 different pathovars, all of which are available to legitimate researches via international culture collections such as the... |
DC3000 | Proteobacteria Gammaproteobacteria | 6,397,126 | 5,470 | |
Pseudomonas syringae | phaseolicola1448A | Proteobacteria Gammaproteobacteria | 5,928,787 | 4,983 | Unpublished |
Psychrobacter arcticum | 273-4 | Proteobacteria Gammaproteobacteria | 2,650,701 | 2,147 | Unpublished |
Psychrobacter cryohalolentis | K5 | Proteobacteria Gammaproteobacteria | 41,221 | 44 | Unpublished |
Unspecified | Unspecified | Proteobacteria Gammaproteobacteria | 3,059,876 | 2,467 | Unpublished |
Ralstonia Ralstonia Ralstonia is a genus of proteobacteria, previously included in the genus Pseudomonas. It is named after the American bacteriologist E. Ralston.-Genomics:* *... eutropha |
JMP134 | Proteobacteria Betaproteobacteria | 3,806,533 | 3,439 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,726,152 | 2,407 | Unpublished |
Ralstonia metallidurans | CH34 | Proteobacteria Betaproteobacteria | 3,928,089 | 3,601 | Unpublished |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,580,084 | 2,313 | Unpublished |
Ralstonia solanacearum | GMI1000 | Proteobacteria Betaproteobacteria | 3,716,413 | 3,441 | |
Unspecified | Unspecified | Proteobacteria Betaproteobacteria | 2,094,509 | 1,679 | |
Rhizobium Rhizobium Rhizobium is a genus of Gram-negative soil bacteria that fix nitrogen. Rhizobium forms an endosymbiotic nitrogen fixing association with roots of legumes and Parasponia.... etli |
CFN42 | Proteobacteria Alphaproteobacteria | 4,381,608 | 4,067 | |
Rhizobium leguminosarum | viciae3841 | Proteobacteria Alphaproteobacteria | 7,751,309 | 4,746 | Unpublished |
Rhodobacter sphaeroides | 2.4.1 | Proteobacteria Alphaproteobacteria | 3,188,609 | 3,022 | Unpublished |
Unspecified | Unspecified | Proteobacteria Alphaproteobacteria | 943,016 | 835 | Unpublished |
Rhodoferax ferrireducens | DSM15236 | Proteobacteria Betaproteobacteria | 4,712,337 | 4,170 | Unpublished |
Rhodopirellula baltica | strain1 | Planctomycetes Planctomycetacia | 7,145,576 | 7,325 | Unpublished |
Rhodopseudomonas palustris | BisB18 | Proteobacteria Alphaproteobacteria | 5,513,844 | 4,886 | Unpublished |
Rhodopseudomonas palustris | BisB5 | Proteobacteria Alphaproteobacteria | 4,892,717 | 4,397 | Unpublished |
Rhodopseudomonas palustris Rhodopseudomonas palustris Rhodopseudomonas palustris is a gram-negative purple non-sulfur bacteria, notable for its ability to switch between four different modes of metabolism.... |
CGA009 | Proteobacteria Alphaproteobacteria | 5,459,213 | 4,833 | |
Rhodopseudomonas palustris | HaA2 | Proteobacteria Alphaproteobacteria | 5,331,656 | 4,683 | Unpublished |
Rhodospirillum rubrum | ATCC11170 | Proteobacteria Alphaproteobacteria | 4,352,825 | 3,791 | Unpublished |
Rickettsia bellii | RML369-C | Proteobacteria Alphaproteobacteria | 1,522,076 | 1,429 | Unpublished |
Rickettsia conorii Rickettsia conorii Rickettsia conorii is a unicellular, gram-negative, obligate intracellular bacterium of the genus Rickettsia that causes human disease called Boutonneuse fever, Mediterranean spotted fever, Israeli tick typhus, Astrakhan spotted fever, Kenya tick typhus, Indian tick typhus, or other names that... |
Malish7 | Proteobacteria Alphaproteobacteria | 1,268,755 | 1,374 | |
Rickettsia felis Rickettsia felis Rickettsia felis or cat-flea typhus is a species of Rickettsia that causes flea-borne spotted fever in cats. The bacteria can also infect humans and cause illness. Fleas are the vector carriers of the bacteria and it has been found in cat flea populations of North and South America, Southern... |
URRWXCal2 | Proteobacteria Alphaproteobacteria | 1,485,148 | 1,400 | |
Rickettsia prowazekii Rickettsia prowazekii Rickettsia prowazekii is a species of gram negative, Alpha Proteobacteria, obligate intracellular parasitic, aerobic bacteria that is the etiologic agent of epidemic typhus, transmitted in the feces of lice. In North America, the main reservoir for R. prowazekii is the flying squirrel. R... |
Madrid-E | Proteobacteria Alphaproteobacteria | 1,111,523 | 834 | |
Rickettsia typhi Rickettsia typhi Rickettsia typhi is a species of the genus Rickettsia.It is the causative agent of Murine typhus.The genome is similar to that of Rickettsia prowazekii.-References:... |
Wilmington | Proteobacteria Alphaproteobacteria | 1,111,496 | 838 | |
Rubrobacter xylanophilus | DSM9941 | Acidobacteria | 3,225,748 | 3,140 | Unpublished |
Saccharophagus degradans | Feb-40 | Proteobacteria Gammaproteobacteria | 5,057,531 | 4,008 | Unpublished |
Salinibacter ruber | DSM13855 | Bacteroidetes/Chlorobi Bacteroidetes | 3,551,823 | 2,801 | |
Salmonella enterica Salmonella enterica Salmonella enterica is a rod-shaped flagellated, facultative anaerobic, Gram-negative bacterium, and a member of the genus Salmonella.- Epidemiology :... |
ATCC9150 | Proteobacteria Gammaproteobacteria | 4,585,229 | 4,093 | |
Salmonella Salmonella Salmonella is a genus of rod-shaped, Gram-negative, non-spore-forming, predominantly motile enterobacteria with diameters around 0.7 to 1.5 µm, lengths from 2 to 5 µm, and flagella which grade in all directions . They are chemoorganotrophs, obtaining their energy from oxidation and reduction... enterica |
SCB67 | Proteobacteria Gammaproteobacteria | 4,755,700 | 4,445 | |
Salmonella enterica | Ty2 | Proteobacteria Gammaproteobacteria | 4,791,961 | 4,323 | |
Salmonella enterica | typhiCT18 | Proteobacteria Gammaproteobacteria | 4,809,037 | 4,600 | |
Salmonella typhimurium | LT2 | Proteobacteria Gammaproteobacteria | 4,857,432 | 4,452 | |
Shewanella denitrificans | OS217 | Proteobacteria Gammaproteobacteria | 4,545,906 | 3,754 | Unpublished |
Shewanella oneidensis | MR1 | Proteobacteria Gammaproteobacteria | 4,969,803 | 4,630 | |
Shigella Shigella Shigella is a genus of Gram-negative, nonspore forming, non-motile, rod-shaped bacteria closely related to Escherichia coli and Salmonella. The causative agent of human shigellosis, Shigella causes disease in primates, but not in other mammals. It is only naturally found in humans and apes. During... boydii |
Sb227 | Proteobacteria Gammaproteobacteria | 4,519,823 | 4,142 | |
Shigella dysenteriae | Sd197 | Proteobacteria Gammaproteobacteria | 4,369,232 | 4,277 | |
Shigella flexneri | 2457T | Proteobacteria Gammaproteobacteria | 4,599,354 | 4,073 | |
Shigella flexneri | 2a301 | Proteobacteria Gammaproteobacteria | 4,607,203 | 4,436 | |
Shigella sonnei | Ss046 | Proteobacteria Gammaproteobacteria | 4,825,265 | 4,224 | |
Silicibacter pomeroyi | DSS3 | Proteobacteria Alphaproteobacteria | 4,109,442 | 3,810 | |
Silicibacter species | TM1040 | Proteobacteria Alphaproteobacteria | 3,200,938 | 3,030 | Unpublished |
Sinorhizobium medicae | WSM419 | Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the... |
3,781,904 | 3,635 | |
Sinorhizobium meliloti Sinorhizobium meliloti Sinorhizobium meliloti is a Gram-negative nitrogen-fixing bacterium . It forms a symbiotic relationship with legumes from the genera Medicago, Melilotus and Trigonella, including the model legume Medicago truncatula. This symbiosis results in a new plant organ termed a root nodule. The S... |
Rm1021 | Alphaproteobacteria Alphaproteobacteria Alphaproteobacteria is a class of Proteobacteria. Like all Proteobacteria, they are Gram-negative.-Characteristics:The Alphaproteobacteria comprise most phototrophic genera, but also several genera metabolising C1-compounds , symbionts of plants and animals, and a group of pathogens, the... |
3,654,135 | 3,341 | |
Sodalis glossinidius | morsitans | Proteobacteria Gammaproteobacteria | 4,171,146 | 2,432 | |
Sphingopyxis alaskensis | RB2256 | Proteobacteria Alphaproteobacteria | 3,345,170 | 3,165 | Unpublished |
Staphylococcus aureus Staphylococcus aureus Staphylococcus aureus is a facultative anaerobic Gram-positive coccal bacterium. It is frequently found as part of the normal skin flora on the skin and nasal passages. It is estimated that 20% of the human population are long-term carriers of S. aureus. S. aureus is the most common species of... |
COL | Firmicutes Bacilli | 2,809,422 | 2,673 | |
Staphylococcus Staphylococcus Staphylococcus is a genus of Gram-positive bacteria. Under the microscope they appear round , and form in grape-like clusters.... aureus |
MRSA252 | Firmicutes Bacilli | 2,902,619 | 2,744 | |
Staphylococcus aureus | MSSA476 | Firmicutes Bacilli | 2,799,802 | 2,619 | |
Staphylococcus aureus | Mu50 | Firmicutes Bacilli | 2,878,529 | 2,699 | |
Staphylococcus aureus | MW2 | Firmicutes Bacilli | 2,820,462 | 2,632 | |
Staphylococcus aureus | N315 | Firmicutes Bacilli | 2,814,816 | 2,593 | |
Staphylococcus aureus | NCTC8325 | Firmicutes Bacilli | 2,821,361 | 2,892 | Unpublished |
Staphylococcus aureus | RF122 | Firmicutes Bacilli | 2,742,531 | 2,589 | Unpublished |
Staphylococcus aureus | USA300 | Firmicutes Bacilli | 2,872,769 | 2,560 | |
Staphylococcus epidermidis | ATCC12228 | Firmicutes Bacilli | 2,499,279 | 2,419 | Unpublished |
Staphylococcus epidermidis | RP62A | Firmicutes Bacilli | 2,616,530 | 2,494 | |
Staphylococcus haemolyticus | JCSC1435 | Firmicutes Bacilli | 2,685,015 | 2,678 | |
Staphylococcus saprophyticus | saprophyticus | Firmicutes Bacilli | 2,516,575 | 2,446 | |
Streptococcus agalactiae Streptococcus agalactiae Streptococcus agalactiae is a beta-hemolytic Gram-positive streptococcus.- Identification :The CAMP test is an important test for identification... |
A909 | Firmicutes Bacilli | 2,127,839 | 1,996 | |
Streptococcus agalactiae | NEM316 | Firmicutes Bacilli | 2,211,485 | 2,134 | |
Streptococcus agalactiae | 2603 V/R | Firmicutes Bacilli | 2,160,267 | 2,124 | |
Streptococcus mutans | UAB159 | Firmicutes Bacilli | 2,030,921 | 1,960 | |
Streptococcus pneumoniae Streptococcus pneumoniae Streptococcus pneumoniae, or pneumococcus, is Gram-positive, alpha-hemolytic, aerotolerant anaerobic member of the genus Streptococcus. A significant human pathogenic bacterium, S... |
R6 | Firmicutes Bacilli | 2,038,615 | 2,043 | |
Streptococcus pneumoniae | TIGR4 | Firmicutes Bacilli | 2,160,842 | 2,125 | |
Streptococcus pyogenes Streptococcus pyogenes Streptococcus pyogenes is a spherical, Gram-positive bacterium that is the cause of group A streptococcal infections. S. pyogenes displays streptococcal group A antigen on its cell wall. S... |
M5Manfredo | Firmicutes Bacilli | 1,841,271 | Unpublished | |
Streptococcus pyogenes | MGAS10270 | Firmicutes Bacilli | 1,928,252 | 1,987 | |
Streptococcus pyogenes | MGAS10394 | Firmicutes Bacilli | 1,899,877 | 1,886 | |
Streptococcus pyogenes | MGAS10750 | Firmicutes Bacilli | 1,937,111 | 1,979 | |
Streptococcus pyogenes | MGAS2096 | Firmicutes Bacilli | 1,860,355 | 1,898 | |
Streptococcus pyogenes | MGAS315 | Firmicutes Bacilli | 1,900,521 | 1,865 | |
Streptococcus pyogenes | MGAS5005 | Firmicutes Bacilli | 1,838,554 | 1,865 | |
Streptococcus pyogenes | MGAS6180 | Firmicutes Bacilli | 1,897,573 | 1,894 | |
Streptococcus pyogenes | MGAS8232 | Firmicutes Bacilli | 1,895,017 | 1,845 | |
Streptococcus pyogenes | MGAS9429 | Firmicutes Bacilli | 1,836,467 | 1,877 | |
Streptococcus pyogenes | SF370 | Firmicutes Bacilli | 1,852,441 | 1,696 | |
Streptococcus pyogenes | SSI1 | Firmicutes Bacilli | 1,894,275 | 1,861 | |
Streptococcus thermophilus | CNRZ1066 | Firmicutes Bacilli | 1,796,226 | 1,915 | |
Streptococcus thermophilus | LMG18311 | Firmicutes Bacilli | 1,796,846 | 1,889 | |
Streptomyces avermitilis | MA4680 | Acidobacteria | 9,025,608 | 7,577 | |
Streptomyces coelicolor | A3 | Acidobacteria | 8,667,507 | 7,825 | |
Symbiobacterium thermophilum | Strain | Acidobacteria | 3,566,135 | 3,337 | |
Synechococcus Synechococcus Synechococcus is a unicellular cyanobacterium that is very widespread in the marine environment. Its size varies from 0.8 µm to 1.5 µm... elongatus |
PCC6301 | Cyanobacteria Chroococcales | 2,696,255 | 2,525 | Unpublished |
Synechococcus elongatus | PCC7942 | Cyanobacteria Chroococcales | 2,695,903 | 2,611 | Unpublished |
Synechococcus sp | WH8102 | Cyanobacteria Chroococcales | 2,434,428 | 2,526 | |
Synechococcus species | CC9605 | Cyanobacteria Chroococcales | 2,510,659 | 2,638 | Unpublished |
Synechococcus species | CC9902 | Cyanobacteria Chroococcales | 2,234,828 | 2,304 | Unpublished |
Synechocystis species | PCC6803 | Cyanobacteria Chroococcales | 3,573,470 | 3,167 | |
Syntrophus aciditrophicus | SB | Proteobacteria delta-epsilon | 3,179,300 | 3,168 | Unpublished |
Thermoanaerobacter tengcongensis | MB4T | Firmicutes Clostridia | 2,689,445 | 2,588 | Unpublished |
Thermobifida fusca | YX | Acidobacteria | 3,642,249 | 3,110 | Unpublished |
Thermosynechococcus elongatus | bp1 | Cyanobacteria Chroococcales | 2,593,857 | 2,475 | Unpublished |
Thermotoga maritima | MSB8 | Thermotogae Thermotogae Thermotogae is a phylum of the domain "Bacteria". This phylum comprises merely the class "Thermotogae", with the order "Thermotogales" and the family "Thermotogaceae".... |
1,860,725 | 1,846 | |
Thermus thermophilus | HB27 | Deinococcus-Thermus Deinococci | 1,894,877 | 1,982 | |
Thermus thermophilus | HB8 | Deinococcus-Thermus Deinococci | 1,849,742 | 1,973 | Unpublished |
Thiobacillus denitrificans | ATCC25259 | Proteobacteria Betaproteobacteria | 2,909,809 | 2,827 | Unpublished |
Thiomicrospira crunogena | XCL2 | Proteobacteria Gammaproteobacteria | 2,427,734 | 2,192 | Unpublished |
Thiomicrospira denitrificans | ATCC33889 | Proteobacteria delta-epsilon | 2,201,561 | 2,097 | Unpublished |
Treponema denticola | ATCC35405 | Spirochaetes | 2,843,201 | 2,767 | |
Treponema pallidum | Nichols | Spirochaetes | 1,138,011 | 1,031 | |
Tropheryma whippelii | TW0827 | Acidobacteria | 925,938 | 784 | Unpublished |
Tropheryma whippelii | Twist | Acidobacteria | 927,303 | 808 | |
Ureaplasma urealyticum | serovar3 | Firmicutes Mollicutes | 751,719 | 611 | |
Vibrio cholerae Vibrio cholerae Vibrio cholerae is a Gram-negative, comma-shaped bacterium. Some strains of V. cholerae cause the disease cholera. V. cholerae is facultatively anaerobic and has a flagella at one cell pole. V... |
N16961 (chromosome I) | Proteobacteria Gammaproteobacteria | 2,961,149 | 2,736 | |
N16961 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,072,315 | 1,092 | ||
Vibrio Vibrio Vibrio is a genus of Gram-negative bacteria possessing a curved rod shape, several species of which can cause foodborne infection, usually associated with eating undercooked seafood. Typically found in saltwater, Vibrio are facultative anaerobes that test positive for oxidase and do not form... fischeri |
ES114 (chromosome I) | Proteobacteria Gammaproteobacteria | 2,906,179 | 2,575 | |
ES114 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,332,022 | 1,172 | ||
Vibrio parahaemolyticus Vibrio parahaemolyticus Vibrio parahaemolyticus is a curved, rod-shaped, Gram-negative bacterium found in brackish saltwater, which, when ingested, causes gastrointestinal illness in humans. V. parahaemolyticus is oxidase positive, facultatively aerobic, and does not form spores... |
RIMD2210633 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,288,558 | 3,080 | |
RIMD2210633 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,877,212 | 1,752 | ||
Vibrio vulnificus Vibrio vulnificus Vibrio vulnificus is a species of Gram-negative, motile, curved, rod-shaped bacteria of the Vibrio Genus. It was first reported by Hollis et al. in 1976. It was subsequently given the name Beneckea vulnifica by Reichelt et al. in 1976 , and finally Vibrio vulnificus by Farmer in 1979... |
CMCP6 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,281,944 | 2,973 | |
CMCP6 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,844,853 | 1,565 | ||
Vibrio vulnificus | YJ016 (chromosome I) | Proteobacteria Gammaproteobacteria | 3,354,505 | 3,262 | |
YJ016 (chromosome II) | Proteobacteria Gammaproteobacteria | 1,857,073 | 1,697 | ||
Wigglesworthia glossinidia | Strain | Proteobacteria Gammaproteobacteria | 697,724 | 611 | |
Wolbachia Wolbachia Wolbachia is a genus of bacteria which infects arthropod species, including a high proportion of insects , as well as some nematodes. It is one of the world's most common parasitic microbes and is possibly the most common reproductive parasite in the biosphere... endosymbiont |
TRS | Proteobacteria Alphaproteobacteria | 1,080,084 | 805 | |
Wolbachia pipientis | wMel | Proteobacteria Alphaproteobacteria | 1,267,782 | 1,195 | |
Wolinella succino | DSMZ1740 | Proteobacteria delta-epsilon | 2,110,355 | 2,044 | |
Xanthomonas axonopodis | citri306 | Proteobacteria Gammaproteobacteria | 5,175,554 | 4,312 | |
Xanthomonas campestris Xanthomonas campestris Xanthomonas campestris is a bacterial species that causes a variety of plant diseases. Available from the NCPPB,and other international Culture collections such as ICMP, ATCC, and LMG in a purified form, it is used in the commercial production of a high-molecular-weight polysaccharide - xanthan... |
8004 | Proteobacteria Gammaproteobacteria | 5,148,708 | 4,273 | |
Xanthomonas campestris | 8510 | Proteobacteria Gammaproteobacteria | 5,178,466 | 4,487 | |
Xanthomonas campestris | ATCC33913 | Proteobacteria Gammaproteobacteria | 5,076,188 | 4,181 | |
Xanthomonas oryzae Xanthomonas oryzae Xanthomonas oryzae is a species of proteobacteria. The major host of the bacteria is rice .The species contains two pathovars which are non-European: Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv... |
KACC10331 | Proteobacteria Gammaproteobacteria | 4,941,439 | 4,637 | |
Xanthomonas oryzae | MAFF311018 | Proteobacteria Gammaproteobacteria | 4,940,217 | 4,372 | Unpublished |
Xylella fastidiosa | 9a5c | Proteobacteria Gammaproteobacteria | 2,679,306 | 2,766 | |
Xylella fastidiosa | Temecula1 | Proteobacteria Gammaproteobacteria | 2,519,802 | 2,034 | |
Yersinia pestis Yersinia pestis Yersinia pestis is a Gram-negative rod-shaped bacterium. It is a facultative anaerobe that can infect humans and other animals.... |
Antiqua | Proteobacteria Gammaproteobacteria | 4,702,289 | 4,167 | |
Yersinia pestis | CO-92BiovarOrientalis | Proteobacteria Gammaproteobacteria | 4,653,728 | 4,008 | |
Yersinia pestis | KIM | Proteobacteria Gammaproteobacteria | 4,600,755 | 4,090 | |
Yersinia pestis | Mediaevalis | Proteobacteria Gammaproteobacteria | 4,595,065 | 3,895 | |
Yersinia pseudotuberculosis | IP32953 | Proteobacteria Gammaproteobacteria | 4,744,671 | 3,974 | |
Zymomonas mobilis | ZM4 | Proteobacteria Alphaproteobacteria | 2,056,416 | 1,998 |
See also
- Genome projectGenome projectGenome projects are scientific endeavours that ultimately aim to determine the complete genome sequence of an organism and to annotate protein-coding genes and other important genome-encoded features...
- Human microbiome projectHuman microbiome projectThe Human Microbiome Project is a United States National Institutes of Health initiative with the goal of identifying and characterizing the microorganisms which are found in association with both healthy and diseased humans . Launched in 2008, it is a five-year project, best characterized as a...
- List of sequenced eukaryotic genomes
- List of sequenced archeal genomes
- List of sequenced plastomes
External links
- Genome Atlas Database
- SUPERFAMILY comparative genomics database Includes genomes of completely sequenced prokaryotes, and sophisticated datamining plus visualisation tools for analysis