Par stability determinant
Encyclopedia
The par stability determinant is a 400bp locus
of the pAD1 plasmid
which encodes a type I toxin-antitoxin system
in Enterococcus faecalis
. It was the first such plasmid addiction module
to be found in gram-positive bacteria.
The par locus contains two gene
s: fst which encodes a 33-amino acid
toxic protein and a gene for RNAII, the small RNA anti-toxin which inhibits fst translation
. The two genes are found on opposite DNA
strands and share a 5' region which is where they are thought to have an antisense interaction. Their RNA secondary structure
s have been predicted computationally
, the complementary regions appear to be presented on exposed loops
for interaction.
par maintains pAD1 by means of post-segregational killing (PSK). If a daughter cell does not inherit
the par locus, the unstable RNAII will quickly degrade leaving the long-lived fst toxin to damage or kill the daughter cell
.
Locus (genetics)
In the fields of genetics and genetic computation, a locus is the specific location of a gene or DNA sequence on a chromosome. A variant of the DNA sequence at a given locus is called an allele. The ordered list of loci known for a particular genome is called a genetic map...
of the pAD1 plasmid
Plasmid
In microbiology and genetics, a plasmid is a DNA molecule that is separate from, and can replicate independently of, the chromosomal DNA. They are double-stranded and, in many cases, circular...
which encodes a type I toxin-antitoxin system
Toxin-antitoxin system
A toxin-antitoxin system is a set of two or more closely linked genes that together encode both a protein 'poison' and a corresponding 'antidote'. When these systems are contained on plasmids – transferable genetic elements – they ensure that only the daughter cells that inherit the plasmid...
in Enterococcus faecalis
Enterococcus faecalis
Enterococcus faecalis – formerly classified as part of the Group D Streptococcus system – is a Gram-positive, commensal bacterium inhabiting the gastrointestinal tracts of humans and other mammals. It is among the main constituents of some probiotic food supplements. Like other species in the genus...
. It was the first such plasmid addiction module
Addiction module
Addiction modules are toxin-antitoxin systems. Each consists of a pair of genes that specify two components: a stable toxin and an unstable antitoxin that interferes with the lethal action of the toxin. Found first in E. coli on low copy number plasmids, addiction modules are responsible for a...
to be found in gram-positive bacteria.
The par locus contains two gene
Gene
A gene is a molecular unit of heredity of a living organism. It is a name given to some stretches of DNA and RNA that code for a type of protein or for an RNA chain that has a function in the organism. Living beings depend on genes, as they specify all proteins and functional RNA chains...
s: fst which encodes a 33-amino acid
Amino acid
Amino acids are molecules containing an amine group, a carboxylic acid group and a side-chain that varies between different amino acids. The key elements of an amino acid are carbon, hydrogen, oxygen, and nitrogen...
toxic protein and a gene for RNAII, the small RNA anti-toxin which inhibits fst translation
Translation (genetics)
In molecular biology and genetics, translation is the third stage of protein biosynthesis . In translation, messenger RNA produced by transcription is decoded by the ribosome to produce a specific amino acid chain, or polypeptide, that will later fold into an active protein...
. The two genes are found on opposite DNA
DNA
Deoxyribonucleic acid is a nucleic acid that contains the genetic instructions used in the development and functioning of all known living organisms . The DNA segments that carry this genetic information are called genes, but other DNA sequences have structural purposes, or are involved in...
strands and share a 5' region which is where they are thought to have an antisense interaction. Their RNA secondary structure
Secondary structure
In biochemistry and structural biology, secondary structure is the general three-dimensional form of local segments of biopolymers such as proteins and nucleic acids...
s have been predicted computationally
Bioinformatics
Bioinformatics is the application of computer science and information technology to the field of biology and medicine. Bioinformatics deals with algorithms, databases and information systems, web technologies, artificial intelligence and soft computing, information and computation theory, software...
, the complementary regions appear to be presented on exposed loops
Stem-loop
Stem-loop intramolecular base pairing is a pattern that can occur in single-stranded DNA or, more commonly, in RNA. The structure is also known as a hairpin or hairpin loop. It occurs when two regions of the same strand, usually complementary in nucleotide sequence when read in opposite directions,...
for interaction.
par maintains pAD1 by means of post-segregational killing (PSK). If a daughter cell does not inherit
Mendelian inheritance
Mendelian inheritance is a scientific description of how hereditary characteristics are passed from parent organisms to their offspring; it underlies much of genetics...
the par locus, the unstable RNAII will quickly degrade leaving the long-lived fst toxin to damage or kill the daughter cell
Cell division
Cell division is the process by which a parent cell divides into two or more daughter cells . Cell division is usually a small segment of a larger cell cycle. This type of cell division in eukaryotes is known as mitosis, and leaves the daughter cell capable of dividing again. The corresponding sort...
.